Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G24
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 30 0.39
01_01_0536 - 3926450-3928447 27 2.8
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549... 27 3.7
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649... 27 4.9
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 27 4.9
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 4.9
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 26 6.4
12_02_0202 - 15465885-15466241,15466539-15468122 26 8.5
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 26 8.5
09_04_0413 + 17372852-17373787 26 8.5
09_04_0409 + 17359459-17360622 26 8.5
07_03_0811 - 21688781-21689830 26 8.5
01_07_0384 + 43209423-43210241 26 8.5
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 26 8.5
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 30.3 bits (65), Expect = 0.39
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = -2
Query: 327 IRPAD-EQIFFKSSRAGVLDH----QSTLKTAQNVRETVHSVRRPRCSSGKTSTDLL 172
+ PA EQIF SS AGV + Q + ++ V E V+ +RR RCS + S +L
Sbjct: 326 VNPATLEQIFGVSSLAGVPNQLVLEQYDNELSRKVNEVVNEIRRQRCSYLRYSLQVL 382
>01_01_0536 - 3926450-3928447
Length = 665
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 54 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSC 194
A V+W I+ G+ +S + V +R S + AVT V +L +C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171
>01_06_0876 -
32654209-32654238,32654357-32654672,32654833-32654901,
32655238-32655275,32655418-32655478,32655550-32655617,
32655729-32655889,32656687-32656751,32656883-32656956,
32658158-32658245,32658800-32658879,32659168-32659224,
32659332-32659404,32659524-32659762,32659846-32660025,
32660150-32660440
Length = 629
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 321 PADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSV 217
P E +F + AG+ H+ +K N+RE+VH V
Sbjct: 458 PGSETLFPGNEVAGIY-HEIAMKDGINLRESVHGV 491
>05_04_0413 -
21063868-21064344,21064416-21064482,21064865-21064948,
21065028-21065158,21065504-21065560,21065818-21065866,
21067357-21067442,21067715-21067792,21067952-21068074,
21068705-21068794,21068796-21068849,21068923-21069020,
21069093-21069160,21069688-21069777,21069870-21070117
Length = 599
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 65 MERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVEV 190
+ + S R R C+ ++DT+ R C S N +V V
Sbjct: 326 IRKSRSIREFDRHATCVVAKYETVDTFYRRCSSANYISNVSV 367
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 101 PGDCIRDNRRSLDTYIRNCCSRNQSRSVEVLPELQRGRRTE*TVSRTF*AVFKVD 265
P R + RSL+ ++C + + E LP++ R R + T S A F D
Sbjct: 674 PRHSSRSSGRSLEESDKSCPENTEGEAKENLPDVLRTTRDDATTSSNGEAFFSSD 728
>02_01_0425 -
3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -2
Query: 315 DEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL 151
D+ + + + G+ +S K + + E +S P SSG +D +W RL +L
Sbjct: 77 DDVVGWHYDKRGLFSMKSAYKVQKEI-ERRNSRSAPASSSGGAQSDQVWKRLWKL 130
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/51 (21%), Positives = 26/51 (50%)
Frame = +3
Query: 18 CLRKYQLVAVAVAEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVT 170
C R L + +++ + + +IG GT G DV+ I+++ + + ++
Sbjct: 796 CCRVAPLQKAGIVDLIKKRTSDMTLAIGDGTFPGANDVSMIQMADVGIGIS 846
>12_02_0202 - 15465885-15466241,15466539-15468122
Length = 646
Score = 25.8 bits (54), Expect = 8.5
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +3
Query: 18 CLRKYQLVAVAVAEVV------WRGSIATVRSIGQGTVSGITDVAWIRISVIVVAV-TRV 176
C R + A A AE + GS + +V + + R ++I+ V T V
Sbjct: 440 CSRGIGVRAAAAAEALVMLSSKMEGSAMIIMKANNNSVDNLVKILLDRDNIILFRVATAV 499
Query: 177 DLLRSCQSYNEDGE 218
L R C +Y ED E
Sbjct: 500 ILERLCANYTEDDE 513
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 312 EQIFFKSSRAGVLDHQSTLKTAQN-----VRETVHSVRRPRCS 199
EQIF SS A L Q+ L+ N V E ++ +RR RCS
Sbjct: 721 EQIFGVSSLAA-LPSQAVLEQFDNELSRKVNEVINEIRRQRCS 762
>09_04_0413 + 17372852-17373787
Length = 311
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 48 AVAEVVWRGSIATVRSIGQGTV 113
AVA WRGS A + S G+G V
Sbjct: 265 AVAASAWRGSAAWLESEGEGHV 286
>09_04_0409 + 17359459-17360622
Length = 387
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 48 AVAEVVWRGSIATVRSIGQGTV 113
AVA WRGS A + S G+G V
Sbjct: 341 AVAASAWRGSAAWLESEGEGHV 362
>07_03_0811 - 21688781-21689830
Length = 349
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 207 RCSSGKTSTDLLWLRLQQLRIY-VSRLRRLSRIQSPGLWIV 88
R SSG S L L Q+ +Y V RLRRL+ + PGL ++
Sbjct: 282 RHSSGLASLTLRLAPLTQMTLYNVRRLRRLNAV-LPGLEVL 321
>01_07_0384 + 43209423-43210241
Length = 272
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 62 CMERQHSHRTIHRPG 106
C+ R++SHR IHR G
Sbjct: 149 CLGRRYSHRYIHRAG 163
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 107 DCIRDNRRSLDTYIRNCC-SRNQSRSVEVLPELQRG 211
DC++ RR L+ + CC SRN +V L G
Sbjct: 128 DCLQGCRRLLEVHPLTCCESRNMMHGFQVCHSLGGG 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,103,499
Number of Sequences: 37544
Number of extensions: 117178
Number of successful extensions: 377
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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