Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G17
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    33   0.020
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    33   0.020
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    31   0.061
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.75 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   0.99 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   0.99 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   5.3  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   5.3  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    24   7.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   7.0  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.0  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    24   9.3  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    24   9.3  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 32.7 bits (71), Expect = 0.020
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRA 12
           LAR A+ +L E+G+I++V QH  Q I TRA
Sbjct: 55  LARIAIRDLAERGVIQKVDQHSKQAIYTRA 84



 Score = 27.5 bits (58), Expect = 0.75
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 171 KEVPQYKLITPAVVSERLKVRG 106
           KEVP +K I+ +V+ +R+K+ G
Sbjct: 32  KEVPAFKFISVSVLVDRMKING 53


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 32.7 bits (71), Expect = 0.020
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 151 LVLWDF-LXTVSHTWVYQTTPGCSTCH---ELFLWTTSSSWLCRHRILPSSSVFFEAVWP 318
           +V+WD    +VS      T    S C    + FL T S  W C    L   S+ ++ V  
Sbjct: 48  VVIWDLSTFSVSRVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILWDLRDGSIVYQVVL- 106

Query: 319 KPSRPSWAASLNWHRPAEFI 378
             S P W+ASL+ H+   F+
Sbjct: 107 --SAPVWSASLHPHKINTFV 124


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 31.1 bits (67), Expect = 0.061
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTR 15
           LAR A+ +L E+G+I++V QH  Q I TR
Sbjct: 55  LARIAIRDLAERGVIQKVDQHSKQAIYTR 83



 Score = 27.5 bits (58), Expect = 0.75
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 171 KEVPQYKLITPAVVSERLKVRG 106
           KEVP +K I+ +V+ +R+K+ G
Sbjct: 32  KEVPAFKFISVSVLVDRMKING 53


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.75
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 177  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 275
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 303 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 205
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 196 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 297
           YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 45  DYLFDETFFPKLDECSSR 98
           D LF E+F  +LD C  R
Sbjct: 684 DELFSESFLSRLDNCEKR 701


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 210 RCCLINPRMRNCXKEV 163
           RCC I  R+ NC KE+
Sbjct: 99  RCCQIIARVVNCVKEI 114


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -3

Query: 315 PNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEV 163
           PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN  +++
Sbjct: 153 PNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRNLQEQL 200


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 198 SNNTWLFNLSRTFPLDHFFFLAL 266
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 256 SWLCRHRILPSSSVFFEAVW 315
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 132 RQQV*LACTVGLPXYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 275
           R  V + C   L  + F  +G+ N         T P  +F+ L  PPP
Sbjct: 35  RWVVVIICIAAL-IFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 325 SRPSWAASLNWHRP 366
           S PS A+SLNW+ P
Sbjct: 20  SSPSKASSLNWNEP 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,029
Number of Sequences: 5004
Number of extensions: 31542
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)