Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G17
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 36 0.014
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 36 0.014
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 32 0.18
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.31
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 29 1.6
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 3.8
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 27 3.8
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 27 3.8
10_05_0041 - 8469769-8470164 27 5.0
10_01_0146 - 1719997-1720386,1721498-1721515 27 6.6
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 26 8.7
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 26 8.7
04_04_0176 - 23329589-23331043 26 8.7
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 35.5 bits (78), Expect = 0.014
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -3
Query: 168 EVPQYKLITPAVVSERLKVRG 106
EVP+YK ITP+V+SERL++ G
Sbjct: 54 EVPKYKQITPSVLSERLRING 74
Score = 34.7 bits (76), Expect = 0.025
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRAT 9
LARRA+ +L ++GLI+ V H Q I TRAT
Sbjct: 76 LARRAMKDLMDRGLIRMVSVHCSQQIYTRAT 106
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 220 LNNQVLFDKPTYEKLXQGSP 161
+NN VLFD+ TY+KL P
Sbjct: 37 VNNSVLFDQATYDKLLSEVP 56
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 35.5 bits (78), Expect = 0.014
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -3
Query: 168 EVPQYKLITPAVVSERLKVRG 106
EVP+YK ITP+V+SERL++ G
Sbjct: 54 EVPKYKQITPSVLSERLRING 74
Score = 34.3 bits (75), Expect = 0.033
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRAT 9
LARRA+ +L +GLI+ V H Q I TRAT
Sbjct: 76 LARRAINDLMTRGLIRMVSVHSSQQIYTRAT 106
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 220 LNNQVLFDKPTYEKLXQGSP 161
+NN VLFD+ TY+KL P
Sbjct: 37 VNNSVLFDQATYDKLLSEVP 56
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 31.9 bits (69), Expect = 0.18
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = -3
Query: 168 EVPQYKLITPAVVSERLK 115
EVP+YK ITP+V+SERL+
Sbjct: 988 EVPKYKQITPSVLSERLR 1005
Score = 31.9 bits (69), Expect = 0.18
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRAT 9
LAR+A+ +L +G I+ V H Q+I TRAT
Sbjct: 1094 LARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 220 LNNQVLFDKPTYEKLXQGSP 161
+NN VLFDK TY+KL P
Sbjct: 971 VNNSVLFDKATYDKLLSEVP 990
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 329 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 204
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 100 WREEHSSSLGKKVSSNR*SNTMGR*STHVRPR 5
W ++ SSS G K+ + R SNT + S + PR
Sbjct: 528 WMQKDSSSKGNKIGNTRSSNTPSKFSGCILPR 559
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 323 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 207
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 232 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASL 351
+F W S L R+R+L + F+A+ P + SWAA L
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALL 103
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 341 AQEGREGFGQTASKNTEEEGRIRWRQSQEEE 249
A+E EG G K EEE R R R+ +EEE
Sbjct: 468 AEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>10_05_0041 - 8469769-8470164
Length = 131
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 344 AAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 246
A + GREG G+ +S ++ R RW+ +++
Sbjct: 31 ARERGREGGGEASSTTIDDGERRRWQDGLRDDL 63
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 315 PNSLKKHRRRRKDPVAAKPRRRS 247
P+ + RRRR +P +PRRR+
Sbjct: 83 PDDGGQRRRRRSEPATTQPRRRA 105
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 131 YLKD*RSEVXLARRALIELREKGLIKQVVQHHGQVIXTRATK 6
YL+ R ++ AR+ L + RE I+ +QH+ Q++ +K
Sbjct: 618 YLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSK 659
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 26.2 bits (55), Expect = 8.7
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +1
Query: 217 STCHELFLWTTSSSWLCRHRILPSSSVFF--EAVWPKPSRP 333
STCH++ L S WL L S + F E VW P P
Sbjct: 261 STCHKMQLPFKLSDWLSTVPTLTSLHLDFQDEMVWILPEEP 301
>04_04_0176 - 23329589-23331043
Length = 484
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 332 GREGFGQTASKNTEEEGRIRWRQSQEEEVVQR 237
GR+GF + EE GR R R +EE +R
Sbjct: 405 GRDGFDLSRKHGHEERGRYRPRVLEEEREHER 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,523
Number of Sequences: 37544
Number of extensions: 229533
Number of successful extensions: 808
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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