Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G17
(380 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein. 46 3e-05
BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25 p... 46 3e-05
BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25 p... 46 3e-05
BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25 p... 46 3e-05
AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25 p... 46 3e-05
AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens ... 31 1.6
>M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein.
Length = 125
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3
Query: 300 KHRRRRKDPV---AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVV 130
K ++ KDPV K +++ K K KEVP YKLITPAVV
Sbjct: 14 KSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVV 73
Query: 129 SERLKVRG 106
SERLK+RG
Sbjct: 74 SERLKIRG 81
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
LAR AL EL KGLIK V +H QVI TR TKG
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3
Query: 300 KHRRRRKDPV---AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVV 130
K ++ KDPV K +++ K K KEVP YKLITPAVV
Sbjct: 14 KSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVV 73
Query: 129 SERLKVRG 106
SERLK+RG
Sbjct: 74 SERLKIRG 81
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
LAR AL EL KGLIK V +H QVI TR TKG
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3
Query: 300 KHRRRRKDPV---AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVV 130
K ++ KDPV K +++ K K KEVP YKLITPAVV
Sbjct: 14 KSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVV 73
Query: 129 SERLKVRG 106
SERLK+RG
Sbjct: 74 SERLKIRG 81
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
LAR AL EL KGLIK V +H QVI TR TKG
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTRNTKG 115
>BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3
Query: 300 KHRRRRKDPV---AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVV 130
K ++ KDPV K +++ K K KEVP YKLITPAVV
Sbjct: 14 KSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVV 73
Query: 129 SERLKVRG 106
SERLK+RG
Sbjct: 74 SERLKIRG 81
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
LAR AL EL KGLIK V +H QVI TR TKG
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTRNTKG 115
>AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 46.4 bits (105), Expect = 3e-05
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -3
Query: 300 KHRRRRKDPV---AAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVV 130
K ++ KDPV K +++ K K KEVP YKLITPAVV
Sbjct: 14 KSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVV 73
Query: 129 SERLKVRG 106
SERLK+RG
Sbjct: 74 SERLKIRG 81
Score = 41.5 bits (93), Expect = 9e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -1
Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
LAR AL EL KGLIK V +H QVI TR TKG
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTRNTKG 115
>AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ39715 fis, clone SMINT2013228. ).
Length = 120
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +1
Query: 169 LXTVSHTWVYQTTPGCSTCH---ELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSW 339
L T +HTW Y+ P CS C+ ++++ T H P S + V +P+ +
Sbjct: 23 LHTHTHTWYYRCEPTCSACYTHTNIYIFKTEF-----HSYCPGWSAMRDLVSLQPATSAS 77
Query: 340 AASL--NWH 360
SL NW+
Sbjct: 78 CLSLPSNWN 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,478,751
Number of Sequences: 237096
Number of extensions: 1358151
Number of successful extensions: 3237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3231
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -