Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G17
         (380 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...    63   1e-10
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...    63   1e-10
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...    63   1e-10
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...    60   7e-10
AY113416-1|AAM29421.1|  583|Drosophila melanogaster RE16761p pro...    28   4.7  
AE014298-588|AAF45912.2|  583|Drosophila melanogaster CG6414-PA ...    28   4.7  
AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p pro...    27   6.2  
AE014134-2656|AAG22436.2|  379|Drosophila melanogaster CG4793-PB...    27   6.2  
AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC...    27   6.2  
AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC...    27   6.2  
AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB...    27   6.2  
AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA...    27   6.2  
AY113336-1|AAM29341.1|  404|Drosophila melanogaster AT31705p pro...    27   8.2  
AY060945-1|AAL28493.1|  404|Drosophila melanogaster GM08440p pro...    27   8.2  
AE013599-679|AAF59063.1|  404|Drosophila melanogaster CG8635-PA ...    27   8.2  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
           LA+RALIELREKGLIKQVVQHH QVI TRATKG
Sbjct: 82  LAKRALIELREKGLIKQVVQHHSQVIYTRATKG 114



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/62 (48%), Positives = 32/62 (51%)
 Frame = -2

Query: 346 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQG 167
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKL + 
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 166 SP 161
            P
Sbjct: 61  VP 62



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 303 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVVSE 124
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 15  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 74

Query: 123 RLKVRG 106
           RLK+RG
Sbjct: 75  RLKIRG 80


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
           LA+RALIELREKGLIKQVVQHH QVI TRATKG
Sbjct: 82  LAKRALIELREKGLIKQVVQHHSQVIYTRATKG 114



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/62 (48%), Positives = 32/62 (51%)
 Frame = -2

Query: 346 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQG 167
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKL + 
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 166 SP 161
            P
Sbjct: 61  VP 62



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 303 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVVSE 124
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 15  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 74

Query: 123 RLKVRG 106
           RLK+RG
Sbjct: 75  RLKIRG 80


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
           LA+RALIELREKGLIKQVVQHH QVI TRATKG
Sbjct: 82  LAKRALIELREKGLIKQVVQHHSQVIYTRATKG 114



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/62 (48%), Positives = 32/62 (51%)
 Frame = -2

Query: 346 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQG 167
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKL + 
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 166 SP 161
            P
Sbjct: 61  VP 62



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 303 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVVSE 124
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 15  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 74

Query: 123 RLKVRG 106
           RLK+RG
Sbjct: 75  RLKIRG 80


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATKG 3
           L +RALIELREKGLIKQVVQHH QVI TRATKG
Sbjct: 78  LDKRALIELREKGLIKQVVQHHSQVIYTRATKG 110



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 303 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRNCXKEVPQYKLITPAVVSE 124
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 11  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 70

Query: 123 RLKVRG 106
           RLK+RG
Sbjct: 71  RLKIRG 76



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 26/58 (44%), Positives = 28/58 (48%)
 Frame = -2

Query: 334 KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQGSP 161
           KDAK+SAKQPQ                          KLNNQVLFDK TYEKL +  P
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 58


>AY113416-1|AAM29421.1|  583|Drosophila melanogaster RE16761p
           protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 158 CGTSLXQFLIRGFIKQHLVVQLVTNFSFGPLLLLGFAAT 274
           CG+ +  F    F+  H +V +  NF  GP   LGF +T
Sbjct: 141 CGSGISSFYGPDFLLDHDIVLVSANFRLGP---LGFLST 176


>AE014298-588|AAF45912.2|  583|Drosophila melanogaster CG6414-PA
           protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 158 CGTSLXQFLIRGFIKQHLVVQLVTNFSFGPLLLLGFAAT 274
           CG+ +  F    F+  H +V +  NF  GP   LGF +T
Sbjct: 141 CGSGISSFYGPDFLLDHDIVLVSANFRLGP---LGFLST 176


>AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 315 PNSLKKHRRRRKDPVAAKPRRRSGP 241
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE014134-2656|AAG22436.2|  379|Drosophila melanogaster CG4793-PB,
           isoform B protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 198 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 287
           +NN  L  L+R   LDH    + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219


>AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC,
           isoform C protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 198 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 287
           +NN  L  L+R   LDH    + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219


>AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC,
           isoform C protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 315 PNSLKKHRRRRKDPVAAKPRRRSGP 241
           P+S  + R R+  P++  PRRRS P
Sbjct: 88  PHSRSRSRLRKSPPLSPPPRRRSPP 112


>AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB,
           isoform B protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 315 PNSLKKHRRRRKDPVAAKPRRRSGP 241
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA,
           isoform A protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 315 PNSLKKHRRRRKDPVAAKPRRRSGP 241
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AY113336-1|AAM29341.1|  404|Drosophila melanogaster AT31705p
           protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 362 RCQFK-DAAQEGR-EGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQP 210
           +C+F  D +QE + E          E++    W  ++ +EVV++KSS + ++P
Sbjct: 113 KCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRP 165


>AY060945-1|AAL28493.1|  404|Drosophila melanogaster GM08440p
           protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 362 RCQFK-DAAQEGR-EGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQP 210
           +C+F  D +QE + E          E++    W  ++ +EVV++KSS + ++P
Sbjct: 113 KCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRP 165


>AE013599-679|AAF59063.1|  404|Drosophila melanogaster CG8635-PA
           protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -1

Query: 362 RCQFK-DAAQEGR-EGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQP 210
           +C+F  D +QE + E          E++    W  ++ +EVV++KSS + ++P
Sbjct: 113 KCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRP 165


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,521
Number of Sequences: 53049
Number of extensions: 366436
Number of successful extensions: 1023
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)