Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G17
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    46   9e-06
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.85 
Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   6.0  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   6.0  
Z96102-1|CAE17867.1|  220|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    26   7.9  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   7.9  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    26   7.9  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 46.0 bits (104), Expect = 9e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -1

Query: 101 LARRALIELREKGLIKQVVQHHGQVIXTRATK 6
           LA+  L EL+ KGL+K VV HHGQV+ TRATK
Sbjct: 79  LAKAGLKELQAKGLVKCVVHHHGQVVYTRATK 110



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 171 KEVPQYKLITPAVVSERLKVR 109
           KEV  YKLITP+VVSERLKVR
Sbjct: 56  KEVITYKLITPSVVSERLKVR 76



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = -2

Query: 346 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKL 176
           MPPKKD K     P                            LNN VLFD+ TY+KL
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKL 54


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 335 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 234
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 151 LVLWDFLXTVSHTWVYQTTPGCSTCHELFLWTTSSSW 261
           L+ WD       T  ++T+  C  C++ F W   + W
Sbjct: 271 LMCWDMNCKRVETPEWKTSDCCQKCNQPFFWNLQAMW 307


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 294 RRRRKDPVAAKPRRRSGP 241
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 294 RRRRKDPVAAKPRRRSGP 241
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>Z96102-1|CAE17867.1|  220|Caenorhabditis elegans Hypothetical
           protein H39E23.2 protein.
          Length = 220

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 15  TCVDHLPMVLDYLFDETFFPKLDECSSRQGNLGPLIF 125
           TC+++     D++  ET    LD CS    N+GP+ F
Sbjct: 87  TCMENTKCYKDFVLFET----LDRCSHDAFNIGPMSF 119


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 6 protein.
          Length = 1396

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 122 LSDTTAGVISLYCGTSLXQFLIRGFIKQHLVVQLVTN 232
           L D     +  + G  L + LIRGF+   LV+ LVT+
Sbjct: 629 LLDDPLSAVDAHVGKKLYENLIRGFLSDKLVI-LVTH 664


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 292 SVFFEAVWPKPSR 330
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = +1

Query: 196 YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 282
           YQ    CS    TC   F W     W CR R++
Sbjct: 365 YQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,036,824
Number of Sequences: 27780
Number of extensions: 184606
Number of successful extensions: 500
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)