Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G16
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 271 3e-73
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 2.9
U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily as... 29 3.9
AF026211-3|AAK77634.2| 340|Caenorhabditis elegans Hypothetical ... 29 3.9
AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic in... 28 5.1
Z69884-1|CAA93748.1| 313|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical pr... 27 9.0
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 9.0
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 271 bits (664), Expect = 3e-73
Identities = 129/156 (82%), Positives = 145/156 (92%)
Frame = -3
Query: 573 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 394
R+ +V SK +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 393 EEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 214
E+KDPKRLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122
Query: 213 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 106
HHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDF
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDF 158
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 101 VKSPFGGGRPGRVQEEEPPAREQGGGAANDEEE 3
++SP+GGGRPGRV+ +G GA D+EE
Sbjct: 160 LQSPYGGGRPGRVKRR---TLRKGDGAGGDDEE 189
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = -3
Query: 465 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 289
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 288 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 124
+ F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSS 153
>U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical
protein ZC53.1 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 35 APLPEVLPLVHVQDDLHRMEISREKSMCLPESRRTINDGMF 157
A +P+ LPL V D + R + SR T+NDG +
Sbjct: 70 ASVPQPLPLTRVSDRVRRRTVQFADVSPTASSRNTLNDGFY 110
>Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical
protein F45D3.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -2
Query: 316 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 146
KTDE A S+ D G +SA A V + P + S NFD K SC C PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 153 CSQLACGHEYAFAGSKFWHDG 215
C + CG E+ F K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172
>U58749-10|AAK18879.1| 465|Caenorhabditis elegans Temporarily
assigned gene nameprotein 224 protein.
Length = 465
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 150 GCSQLACGHEYAFAGSKFWH 209
GC +L +EY FA K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358
>AF026211-3|AAK77634.2| 340|Caenorhabditis elegans Hypothetical
protein T13B5.9 protein.
Length = 340
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 26 RHPAPLPEVLPLVHVQDDLHRMEISREKSMCLPESRRTINDGMFTTCLRTRI 181
R P L E LP+V V D+ + + S+CL S R N G F R I
Sbjct: 99 RDPDLLAEALPIVLVADNRPPLAVM---SICLQNSPRPRNSGFFFDLFRHEI 147
>AC024867-3|AAK68601.2| 327|Caenorhabditis elegans Eukaryotic
initiation factor protein3.I protein.
Length = 327
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 255 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 389
+DA + Q+S A + + ++H V + E +GH+ + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298
>Z69884-1|CAA93748.1| 313|Caenorhabditis elegans Hypothetical
protein F31F6.1 protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.8
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = -3
Query: 483 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE---GNALLRRLV-RIGVLDE 316
E G +R + LAR + R TL EKD +++F+ G ++R++ R G LD+
Sbjct: 106 ECGKMKSVSQFRTVFHLARCKLGNRMSPTLIEKDFEKIFQQYFGMLSMQRVLGRTGTLDQ 165
Query: 315 KQMKLDYVLGLKIEDFLERRLQTQV-FKAGLAKSIHHARIL 196
K + + E+ R L T V G + H R+L
Sbjct: 166 LFAKCSFEELMPAENV--RSLGTPVELSGGSVTVLPHRRVL 204
>Z48795-7|CAA88731.1| 347|Caenorhabditis elegans Hypothetical
protein R05H5.1 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 539 VTYVFENTDGTLLFTILASSH 601
+ YVF+N+D LLF IL H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = -3
Query: 282 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 157
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/42 (23%), Positives = 28/42 (66%)
Frame = -3
Query: 282 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 157
++EDFLE+ ++ ++ ++ ++I H+R LI+ + ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,838
Number of Sequences: 27780
Number of extensions: 347781
Number of successful extensions: 1077
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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