Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G15
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    28   0.91 
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   3.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.9  
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    25   8.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    25   8.5  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 528 FLILNLHSDMYFLKKANLLQNSSLY 454
           FLI  LHSD+YFL   +++   ++Y
Sbjct: 201 FLIETLHSDIYFLHSPSIIALGAIY 225


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 347 KKQKTLEISPKPXRNQI*YKLANNYL 424
           K Q +L +SPK   +Q+ YKL +NYL
Sbjct: 356 KLQSSL-LSPKQDLSQVDYKLVHNYL 380


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 603 KYIRCLVHVFFKLFYIEALMELVYIFLILNLHSDM---YFLKKANLLQ 469
           KY  C++   + LF  +  +    I  + N H D+   + LKK  +L+
Sbjct: 246 KYFSCILPQVWSLFSTQPRLASQLIIAVTNTHCDIVTSFLLKKLQILE 293


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 483 PFLRNTCRNVNLKLKKYKPTPSMPLYKII*KKHG-PDNEY 599
           P LR +   +N  LKKY P P + +  +  K  G P N Y
Sbjct: 106 PQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAY 145


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 331 SYVFYKYLKPNIYYMRSESTIVVLATHVCI 242
           +YV  K  + + +YMRSE  I VL  ++ I
Sbjct: 906 AYVIIKGAQGDQFYMRSEDPIYVLENNIPI 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,067
Number of Sequences: 5004
Number of extensions: 37063
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)