Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G14
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    31   0.10 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   6.7  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   6.7  

>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 220 LKHFYNLYFWTVNYFLYTS-NWWFCYKIHKKH 312
           LK FY  Y+  V  +L T+ +WW CY+  KK+
Sbjct: 132 LKGFYRGYWMGVAIYLPTTVSWWVCYEESKKY 163


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 453  NEFLFFFVHK*IYVTMYFCACLILFTLKNIYLHFHNMIRFL 575
            N+F+  F     Y+T YF +CL    L   Y+H +N +  L
Sbjct: 1199 NKFVLLFSKWHKYLTSYFESCL----LSTEYMHIYNSVIIL 1235


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 410 YTITVPSRFPNNVFSDKKSNSHPKNQSNINNGQC 309
           Y  T  S  P +      SNSH  N+S  NN  C
Sbjct: 83  YDSTSNSNEPISFNEPDSSNSHHNNESICNNDNC 116


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 229 FYNLYFWTVNYFLY-TSNWW 285
           FY L FW +  ++Y +SN+W
Sbjct: 163 FYYLCFWFLGLYIYRSSNYW 182


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 232 YNLYFWTVNYFLYTSNWWFCYKIHK 306
           YN Y + ++YF  T+ W   Y  +K
Sbjct: 315 YNFYAYGISYFFLTAIWPVFYDTYK 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,085
Number of Sequences: 5004
Number of extensions: 44735
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)