Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G10
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 31 0.24
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb... 30 0.31
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 30 0.41
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 29 0.96
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 27 2.2
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 27 3.9
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 3.9
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 5.1
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 26 5.1
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 26 5.1
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 26 6.7
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 25 8.9
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 25 8.9
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 25 8.9
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -1
Query: 522 DTNSNENIKEIPITESNQLKRKLVENDNEPRRKIAKPDEEVSEPVIDELKEN 367
D NS +N+ +T + ++ +V++++EP +K +E V +++ KEN
Sbjct: 100 DNNSFDNVNSSKLTNPSPVQPNIVKSESEPAN--SKQNEVVEATSVEKAKEN 149
>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 109
Score = 30.3 bits (65), Expect = 0.31
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 477 SNQLKRKLVENDNEPRRKIAKPDEEVSEPVIDELKENSNKGDPKIP 340
+NQ K+K + N EP+++ K D ++S P + E + S P
Sbjct: 47 ANQQKQKEIVNQPEPQQETPKADADMSTPTMAEQVQTSFSNPASTP 92
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 29.9 bits (64), Expect = 0.41
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 258 PQNIFLELVNFIKPGRPFVIYYNVSEPLQNLYLA-LKSQSNVAALKLTSNWMRNYQVLPE 82
P+ I L F+ + V N+ EP + +YL +++ +A + L S N
Sbjct: 889 PEEIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLH 948
Query: 81 RTRPDVM 61
+ +PD+M
Sbjct: 949 QFKPDIM 955
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 28.7 bits (61), Expect = 0.96
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 534 YQGCDTNSNENIKEIPITESNQLKRKLVENDNEPRRKIA 418
+ G +TN+ +N + ++ +KL+ NDNE R A
Sbjct: 418 FSGSETNNKDNSLSVDFRSLIEVLQKLLSNDNEETRLCA 456
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 510 NENIKEIPITESNQLKRKLVENDNEPR--RKIAKPDEEVSEPVIDELKE 370
N NI+ +P S++ + + P +I++ +EE+SE DE+++
Sbjct: 1156 NPNIRNVPERSSSRFQGIRINYSEAPSSSEEISEEEEEISEEDFDEIED 1204
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 384 DELKENSNKGDPKIPKWHFDNIYAAQILEKKLDSLVITCKEDPQNIF 244
D L+E+S P IP D + + K LD VITCK +++F
Sbjct: 365 DSLRESS----PSIPNSPID---PSNLYVKNLDDTVITCKSQLEDLF 404
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 105 RNYQVLPERTRPDVMMNG 52
R YQVLPERT P + + G
Sbjct: 403 RPYQVLPERTHPFMTVRG 420
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 3.9
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Frame = -1
Query: 513 SNENIKEIPITESNQLKRKLVENDNEPRRKIAKPDEEVSEPVIDELKENSNKG------D 352
+NE+ +PI + L + +V + N +++ + E S + ++K+ K
Sbjct: 149 NNESYNRLPIKTKDGLLQNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIA 208
Query: 351 PKIP-KWHFDN------IYAAQILEKKLDSL 280
P+IP K N I A Q+LE+ +++L
Sbjct: 209 PEIPVKQQIKNDKEALGIQAQQLLEEPVENL 239
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 753 IYCEGNHL-LYDSGSNGLVAA-ALLSSIGQNTNGRLVHMHPGNMS 625
+ CE H LY NG+V A + S ++TNGR +H P ++S
Sbjct: 395 VECEQPHADLYSL--NGVVKAPGAVQSPSESTNGRKIHEEPFSIS 437
>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = -1
Query: 279 VITCKEDPQNIFLELVNFIKPGRPFVIYYN 190
+ +C +DP + + ++ IKPG+P ++++
Sbjct: 170 IFSCFQDPIRVRRDWLDSIKPGQPETLWFD 199
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = -1
Query: 534 YQGCDTNSNENIKEIPITESNQLKRKLVENDNEPRRKIAKPDEEVSEPVIDELKENSNKG 355
++ N NE IK+IP+ E + + K ++ I D+ +D++
Sbjct: 336 HESISDNENEGIKDIPVAEDDDITLKFRAAKSKINTNIKNLDDYGEGNRLDDV-----DA 390
Query: 354 DPKIPKWHFDNIYAAQILEK 295
+ KI + YA QI +K
Sbjct: 391 EDKIARKRSLKFYANQIDQK 410
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = -1
Query: 486 ITESNQLKRKLVENDNEPRRKIAKPDEEVSEPVIDELKENSNKGDPKIPKWHFDNIYAAQ 307
++ +++L V++ N ++ K + + D L E KIP+ ++ A Q
Sbjct: 1 MSNNSRLPENGVQSGNGEDAELKKSMRIIEREIPDSLLE-------KIPE--AEDYIALQ 51
Query: 306 ILEKKLDSLVITCKEDPQN 250
LE+KLDSL++ + D Q+
Sbjct: 52 DLERKLDSLIVRKRFDLQD 70
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.9
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = -1
Query: 630 MSQKQALLAMNFPEEQLKRCISVNVYSALRQFYQGCDTNSNENIKEIPITESNQLKRKLV 451
+S LL F ++QLK ++ L QF+ G I E+P TE LK +
Sbjct: 28 LSYAAYLLPAEFRDDQLKSQTITSILLLLHQFHTGL---LFRKIAELPKTEQAILKSERT 84
Query: 450 ENDNEPRRKIAKPDEEVSE 394
+ E RK E+VSE
Sbjct: 85 QY-LEYFRKKNPSFEKVSE 102
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 456 LVENDNEPRRKIAKPDEEVSEPVIDELKENSNK 358
+VE DNE K E + ++ELKE +NK
Sbjct: 323 VVEVDNEEHSDFPKLREMLIRTHLEELKEQTNK 355
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 414 PDEEVSEPVIDELKENSNKGDPKIPKWHFDNIYAAQILEKKLDSLVITCK 265
PD I+++ E ++K W F N + E+ L L+ TCK
Sbjct: 36 PDPHDRSKTIEKIHEAASKSTFDACFWLFRNAAISPFTEEMLGPLLPTCK 85
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 247 YILRIFLTSYNQ*IQFFFKNLCSINVIEMPFWYLWITFVTIFL 375
Y+L + Y + FFKN + FW L T IFL
Sbjct: 85 YVLNVLAICYLKYKDAFFKNYGAAEWTLFGFWCLVCTLALIFL 127
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/33 (33%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = -2
Query: 338 NGISITFMLHKF-LKKNWIHWL*LVRKILKIYF 243
+G+S TF++ K+ ++ W++ L L R ++K+Y+
Sbjct: 48 SGLS-TFVITKYYIRPQWLYTLALRRALIKLYY 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,767
Number of Sequences: 5004
Number of extensions: 53333
Number of successful extensions: 210
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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