Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G07
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 105 5e-24
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 48 2e-06
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 29 0.64
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 27 2.6
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 26 4.5
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.5
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 4.5
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 6.0
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 26 6.0
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 105 bits (253), Expect = 5e-24
Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Frame = -3
Query: 540 LLTFIRAAESDPSLVSLALGQDLTALGLNLNSPDN---LNLTFAGPWADTPCR-PQDMDY 373
LL IR +S+ S +L LG DL ALG +L + ++ PWA+ + P
Sbjct: 5 LLPIIRMEDSEMS--TLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQPM 62
Query: 372 HVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEE 193
P N + A ++ ++ ++ LFY+FY DV+Q AAA EL NR WR+H E
Sbjct: 63 FKLPACYKN--VNPPPAISKIFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKEL 120
Query: 192 KVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPKEFHLDYS 61
+VW++ PGM +++T +ERG Y FFD +W+++ K+F L Y+
Sbjct: 121 RVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKDFLLMYA 164
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -3
Query: 294 DLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYF 115
D LFY+FY G Q A EL + WR+H + W + M+ T +E G+Y +
Sbjct: 543 DTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMI--TDEFESGSYRY 600
Query: 114 FDAH-NW-RKVPKEFHLDY 64
FD +W ++ +F Y
Sbjct: 601 FDFEGDWVQRKKADFRFTY 619
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -1
Query: 194 RRCGSHKRPACQWSRRLQRTNAAPTTSSTRTI----GERCRKSFIWITARLEG 48
R G HKR A + R + APTT + TI R K +W+ +EG
Sbjct: 490 RESGQHKRMASLTNSREMQIQHAPTTFAAETIQCVLPIRIEKRVVWMEDGMEG 542
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 281 ICSTVSLVTFYKLRLQQSYTIANGDIIWRRRCGSHK 174
I +V+L + RL Q+YT N ++ G HK
Sbjct: 298 ILLSVALFALFSSRLSQAYTFTNNALLCCHELGLHK 333
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 612 QTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVS 493
+ +PE +V I + M N+ G + L F ++ DP++VS
Sbjct: 142 EDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVS 181
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = -1
Query: 221 IANGDIIWRRRCGSH---KRPACQWSRRLQRTN 132
+A+ D+IW R C H K C W L N
Sbjct: 143 LADDDVIWHRMCEQHINRKCEKCGWGLPLLERN 175
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 411 WADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKED 292
WAD P P D + + Y +G + K L G Y++D
Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDV--KKMNLGAGTYRDD 77
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 282 YLFYCFVGDVLQIAAAAELYNREWRY 205
+L CFV D Q A AAEL W Y
Sbjct: 1382 FLKRCFVSDPNQRATAAELLMDPWVY 1407
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 320 LYDSEDIKKIYYSICSTVSLVTFYKLRLQQSYTIANGD 207
L+ + + + Y+S+ TVSL+ +K+R Q TI G+
Sbjct: 81 LFMGDYVDRGYHSV-ETVSLLIAFKIRYPQRITILRGN 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,748
Number of Sequences: 5004
Number of extensions: 60956
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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