Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G07
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 213 1e-55
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 213 1e-55
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 213 1e-55
U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily ass... 71 1e-12
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 71 1e-12
Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical pr... 55 4e-08
Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical... 55 4e-08
AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical ... 29 2.4
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 29 4.2
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 29 4.2
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 27 9.8
U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class c... 27 9.8
U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class c... 27 9.8
U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class c... 27 9.8
AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein. 27 9.8
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 213 bits (519), Expect = 1e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Frame = -3
Query: 618 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 442
GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S
Sbjct: 36 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 94
Query: 441 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 262
L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY
Sbjct: 95 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 154
Query: 261 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 82
++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK
Sbjct: 155 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 214
Query: 81 EFHLDYSK 58
E L+Y +
Sbjct: 215 ELKLEYKE 222
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 213 bits (519), Expect = 1e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Frame = -3
Query: 618 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 442
GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S
Sbjct: 86 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 144
Query: 441 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 262
L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY
Sbjct: 145 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 204
Query: 261 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 82
++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK
Sbjct: 205 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 264
Query: 81 EFHLDYSK 58
E L+Y +
Sbjct: 265 ELKLEYKE 272
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 213 bits (519), Expect = 1e-55
Identities = 97/188 (51%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Frame = -3
Query: 618 GIQTSPEGKVTNIPDTMIPNQFGIVGLLTFIRAAESDPSLVSLALGQDLTALGLNLN-SP 442
GI T P+G+VTNIP +M+ +QFG+ GL+T++R ++ PS+VSLALG DLT LGLNLN S
Sbjct: 163 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVDN-PSIVSLALGYDLTTLGLNLNLSE 221
Query: 441 DNLNLTFAGPWADTPCRPQDMDYHVPPEYLINGSIREKLAPLRLGRYKEDLLFYLFYCFV 262
L + F GPWAD+P R ++D VP EY+ + IR+KL PLRL + ED+LFYLFY
Sbjct: 222 RKLYMNFGGPWADSPIRAHELDVKVPEEYMTHNHIRDKLPPLRLNKVSEDVLFYLFYNCP 281
Query: 261 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDAHNWRKVPK 82
++ Q+AAA ELY REWR+H E+VW++++ + E+T YE+G Y FD WRK+PK
Sbjct: 282 NEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGNYEKGHYNVFDQMQWRKIPK 341
Query: 81 EFHLDYSK 58
E L+Y +
Sbjct: 342 ELKLEYKE 349
>U41993-8|AAA83449.1| 497|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform a protein.
Length = 497
Score = 70.5 bits (165), Expect = 1e-12
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Frame = -3
Query: 603 PEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS--------------LALG 481
P+G + NIP TM+ +Q+G+ +L + RA ++ L + +G
Sbjct: 121 PDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDKIKNENIEMMTIG 180
Query: 480 QDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPEYLINGSIREKLA 322
DL LG+ + + D TFAGP+A P P +M VP Y +++
Sbjct: 181 FDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNVYYTARTLQSSFD 240
Query: 321 PLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 160
L ++ LFY+FY ++ Q+ AA EL R WRY+M+EK+W+ + G P
Sbjct: 241 MLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 296
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 70.5 bits (165), Expect = 1e-12
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 28/176 (15%)
Frame = -3
Query: 603 PEGKVTNIPDTMIPNQFGIVGLLTFI-----RAAESDPSLVS--------------LALG 481
P+G + NIP TM+ +Q+G+ +L + RA ++ L + +G
Sbjct: 357 PDGDMNNIPPTMLSDQYGMAAMLPILDIVKNRAINANTDLTEEKLRDKIKNENIEMMTIG 416
Query: 480 QDLTALGLNLNSPDNLNL----TFAGPWADTPCRPQDMDY---HVPPEYLINGSIREKLA 322
DL LG+ + + D TFAGP+A P P +M VP Y +++
Sbjct: 417 FDLNELGVPMTTQDTNQKSVWETFAGPFASEPLLPANMGLTYNQVPNVYYTARTLQSSFD 476
Query: 321 PLRL--GRYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMP 160
L ++ LFY+FY ++ Q+ AA EL R WRY+M+EK+W+ + G P
Sbjct: 477 MLHNIPDKFGVHELFYIFYNLPKELWQLNAARELQYRGWRYNMKEKLWVHKKLGEP 532
>Z92826-9|CAD90172.1| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -3
Query: 306 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 127
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670
Query: 126 TYYFFDAHNWRKVPKE-FHLDY 64
TY +FD W + KE F +Y
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEY 692
>Z92826-5|CAB07318.1| 198|Caenorhabditis elegans Hypothetical
protein Y56A3A.1b protein.
Length = 198
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -3
Query: 306 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 127
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 110 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 167
Query: 126 TYYFFDAHNWRKVPKE-FHLDY 64
TY +FD W + KE F +Y
Sbjct: 168 TYVYFDFEKWSQRKKESFTFEY 189
>AL132860-33|CAB60507.2| 701|Caenorhabditis elegans Hypothetical
protein Y56A3A.1a protein.
Length = 701
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -3
Query: 306 RYKEDLLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERG 127
R D LF++FY G Q+ AA L WR+H + W + + T YE+G
Sbjct: 613 RLAPDTLFFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQI--TDDYEQG 670
Query: 126 TYYFFDAHNWRKVPKE-FHLDY 64
TY +FD W + KE F +Y
Sbjct: 671 TYVYFDFEKWSQRKKESFTFEY 692
>AF101318-5|AAC69347.1| 574|Caenorhabditis elegans Hypothetical
protein Y73C8C.7 protein.
Length = 574
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 138 TLKSSRPLACRALVRSTPSPPYDIAIRDCITLLQ 239
T K PL C L++ TP PP ++ +C+ L+
Sbjct: 492 TFKEKAPLICAQLLK-TPEPPNELDDNECLVCLE 524
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 214 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVS 74
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 313 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 359
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 214 MAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVS 74
++++ G+ D ARH G DF R LL + E+GAE S
Sbjct: 350 ISVNMFGKDFDSAKARHGKGNIDFGRRGDDELLSSDEEEEQGAEDAS 396
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 33 R*LRPTLQSCCNPNETLSAPFSNC 104
R L PT+ C NE SA FS+C
Sbjct: 72 RELNPTIAMVCGANEQYSACFSSC 95
>U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform c protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 402 TPCRPQDMDYHVPPEYLINGSIREKLA 322
+PC VPP Y++N +R+K A
Sbjct: 244 SPCTSDQTPTGVPPRYIVNVKMRQKTA 270
>U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform b protein.
Length = 700
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 402 TPCRPQDMDYHVPPEYLINGSIREKLA 322
+PC VPP Y++N +R+K A
Sbjct: 277 SPCTSDQTPTGVPPRYIVNVKMRQKTA 303
>U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform a protein.
Length = 577
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 402 TPCRPQDMDYHVPPEYLINGSIREKLA 322
+PC VPP Y++N +R+K A
Sbjct: 154 SPCTSDQTPTGVPPRYIVNVKMRQKTA 180
>AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein.
Length = 577
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 402 TPCRPQDMDYHVPPEYLINGSIREKLA 322
+PC VPP Y++N +R+K A
Sbjct: 154 SPCTSDQTPTGVPPRYIVNVKMRQKTA 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,135,899
Number of Sequences: 27780
Number of extensions: 349249
Number of successful extensions: 882
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -