Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G06
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.7  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   1.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 516 EGCTVFTKQSVTKNGKGMFKWLSN 587
           EGC  F ++S+TKN     K+ +N
Sbjct: 205 EGCKGFFRRSITKNAVYQCKYGNN 228


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 516 EGCTVFTKQSVTKNGKGMFKWLSN 587
           EGC  F ++S+TKN     K+ +N
Sbjct: 2   EGCKGFFRRSITKNAVYQCKYGNN 25


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 140 NLIKEHCYVRTIKVYKMKIHFKKYS 214
           N IKEH  V  + + K +   KKY+
Sbjct: 176 NKIKEHDTVLVVNIEKSENESKKYA 200


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 141 LNVLTNFFQVFNSN 100
           LNVL +F  +FN+N
Sbjct: 147 LNVLKSFIDLFNAN 160


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 424 LYDLLNASTKKSRVNYNPRNPS 489
           L +L N   K   VNYNP   S
Sbjct: 404 LRELRNLGRKTIMVNYNPETVS 425


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 551  GYRLLCEHSTTFFEVANFTKKLG 483
            GYRL        FE  +F+K+ G
Sbjct: 1015 GYRLSSSEKPYMFETVDFSKEDG 1037


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,965
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)