Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G04
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0197 + 1554449-1555101,1555462-1555558                           34   0.059
08_01_0915 + 9019499-9020971                                           27   6.8  
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351...    27   6.8  
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    27   9.0  

>11_01_0197 + 1554449-1555101,1555462-1555558
          Length = 249

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 248 IIRLQNLPWSANALDIRNFFRGLSIPEGGVHIV----GGELGDAFIAF 117
           +++L+ LP+SA   DI  FF    + E  VHI     G   G+AF+ F
Sbjct: 151 VLKLRGLPYSATTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEF 198



 Score = 33.5 bits (73), Expect = 0.078
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 245 IRLQNLPWSANALDIRNFFRGLSIPEG-GVHIVGGELGDAFIAF 117
           +RL+ LP+  + LDI  FF GL I +   VH  G   G+AF+ F
Sbjct: 35  VRLRGLPFDCDDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVF 78


>08_01_0915 + 9019499-9020971
          Length = 490

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 111 LPESNESISQLASYDVYTPLGYRKAPKEIPNIQSI 215
           +PES  +ISQL+S D+   L Y   P  + N+  +
Sbjct: 441 IPESLGNISQLSSLDLSNNLLYGSVPVSLGNLTEL 475


>07_03_0474 +
           18534071-18534238,18534349-18534445,18534992-18535122,
           18535191-18535286,18535459-18535464,18535521-18535688,
           18535892-18536020,18536613-18536673,18536928-18537031,
           18537137-18537220,18538433-18538461,18538506-18538617,
           18539200-18539313,18539767-18539832,18540237-18540309,
           18540396-18540482,18540710-18540764,18540869-18540940,
           18541039-18541101,18541177-18541294,18541377-18541451
          Length = 635

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 187 GAFRYPRGVYTS*EASWEMLSLL 119
           G FR PRG+Y S E   EM+S++
Sbjct: 193 GLFRRPRGMYFSAEDRGEMMSMV 215


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 189 SGPFDTRGGCTHRRRRAGRC 130
           S P +  GGC H R + G+C
Sbjct: 366 SKPIEKNGGCNHVRCKCGQC 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,205,736
Number of Sequences: 37544
Number of extensions: 219526
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)