Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G04
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 139 WEMLSLLSGSYKQKTTTKRLELYNHLRYSHDNFDLTSCI 23
           W  L +    Y   T+     L NH++YS +  ++ S I
Sbjct: 132 WSKLQVFDCRYVTTTSGMFEALCNHIKYSTNKGNIRSAI 170


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 327 CKNTTVHRKISITHRRLC 380
           C  T+VH     TH +LC
Sbjct: 365 CSQTSVHYSNGQTHSQLC 382


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 138  GRCFHCFQVAINKKQLQKDWN 76
            G C   + V  +KK+ Q++WN
Sbjct: 1487 GGCPMIYFVVEHKKKNQQEWN 1507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,147
Number of Sequences: 438
Number of extensions: 2440
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)