Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G02
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    27   2.8  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    27   3.7  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    27   3.7  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   6.4  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   8.5  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
 Frame = -3

Query: 227 YMGKLVTVKIT----SASKF--SMMGQPIDKPKMAGLTVPLKKGELSGVYGLKRENKRPI 66
           Y+ ++VT   T    S+S F  S    PI     +  T+P K  + S   G+       I
Sbjct: 192 YVSEVVTPTTTNNWNSSSSFTSSTSSTPISSSYSSSGTLPSKSNKSSNHVGVVVGCSVAI 251

Query: 65  P-RLVLLMVGLARFIW 21
           P  +VL+++GL  F+W
Sbjct: 252 PVGVVLILIGLGIFLW 267


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 560 ATDIICGFPTETEAD--FEETMQLCRKYKF--PSLFINQFFPRPGTPAAKMT 417
           A DI C  P   + D  F  T  +  + KF  P+L  ++FFP    P +KM+
Sbjct: 226 AKDIPCLIPCAIDQDPYFRLTRDVSGRLKFKKPALLHSRFFPALQGPQSKMS 277


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 629 EYTRADFEHVVDYLRKEVPGITIATDIICGFPTETEADFE 510
           E  RA    ++  +++E   I  A +I+C  P ET   F+
Sbjct: 127 EVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFD 166


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 629 EYTRADFEHVVDYLRKEVPGITIATDIICGFPTETEADFE 510
           E  RA    ++  +++E   I  A +I+C  P ET   F+
Sbjct: 127 EVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFD 166


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 146 MAGLTVPLK-KGELSGVYGLKRENKRPIPRLVLLMVGLA 33
           MAG+T   +  GEL+        N  P PRL   MVG A
Sbjct: 233 MAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFA 271


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 655 TRYCPT*RGNTREPTSNTWSTISGKKSPASR*PQTSSAASPLRPK 521
           TR+  T   N ++PT+N+  T +   S  S+  ++SS   P   K
Sbjct: 364 TRFLKTDTNNEQKPTNNSTITKATTLSDNSQNDKSSSVTKPTEKK 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,138
Number of Sequences: 5004
Number of extensions: 56205
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)