Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_G02
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 167 8e-42
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299 71 7e-13
01_01_1189 + 9454042-9455655 34 0.14
07_01_0281 - 2067696-2068862 33 0.18
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 30 1.7
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 30 2.2
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545... 29 3.9
02_01_0442 + 3196592-3196661,3198663-3198739,3199185-3199273,320... 28 6.7
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 28 8.9
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 28 8.9
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 167 bits (406), Expect = 8e-42
Identities = 80/181 (44%), Positives = 116/181 (64%)
Frame = -3
Query: 638 MKREYTRADFEHVVDYLRKEVPGITIATDIICGFPTETEADFEETMQLCRKYKFPSLFIN 459
M REYT ++F VVD L + VPG+ IATDIICGFP ET+ DF +T+ L ++Y FP + I+
Sbjct: 254 MNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHIS 313
Query: 458 QFFPRPGTPAAKMTRVPGQEVKKRTKLLSDFFRSYEPYGHKVGETQEVLVTDVSHDKNYF 279
QF+PRPGTPAA+M +VP EVKKR++ L+ F S+ PY G+ + + +T+++ D +
Sbjct: 314 QFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVHL 373
Query: 278 VGHNEFYEQVLIPKEEKYMGKLVTVKITSASKFSMMGQPIDKPKMAGLTVPLKKGELSGV 99
VGH + Y QVL+ + +G VKITS ++S+ G+ I+ +A T EL
Sbjct: 374 VGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSVVAKETQKHNHSELQEE 433
Query: 98 Y 96
Y
Sbjct: 434 Y 434
>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
Length = 556
Score = 71.3 bits (167), Expect = 7e-13
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 18/207 (8%)
Frame = -3
Query: 707 RHPRVYKFLHVPVQSASDQVLSDMKREYTRADFEHVVDYLRKEVPGITIATDIICGFPTE 528
RH V K +H+P QS S VL M+R YTR + +V +R +P + +++D I GF E
Sbjct: 336 RH-NVCKLIHMPAQSGSSAVLERMRRGYTREAYLELVQKIRSIIPDVGLSSDFISGFCGE 394
Query: 527 TEADFEETMQLCRKYKFPSLFINQFFPRPGTPAAK--MTRVPGQEVKKRTKLLSDFFR-- 360
TE + ET+ L R + ++ + R T A + + VP ++R L FR
Sbjct: 395 TEEEHAETLTLVRAVGYDMAYMFAYSMREKTHAHRNYVDDVPDDVKQRRLAELISTFRET 454
Query: 359 SYEPYGHKVGETQEVLVTDVSH--DKNYFV-----GHNEFYEQVLIPK-------EEKYM 222
+ + Y +VG Q VLV + + + GH + V +P + +
Sbjct: 455 TAKIYDSQVGTVQLVLVEGPNKRAPETEMIGKTDRGHRVSFASVPVPHTFEGDELRKPVV 514
Query: 221 GKLVTVKITSASKFSMMGQPIDKPKMA 141
G + VKIT +S S+ G I + ++
Sbjct: 515 GDFIEVKITKSSTASLSGDVIARTSLS 541
>01_01_1189 + 9454042-9455655
Length = 537
Score = 33.9 bits (74), Expect = 0.14
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Frame = -3
Query: 353 EPYGHKVGETQEVLVT-DVSHDKNYFV-----GHNEFYEQVLIPKEEKYMGKLVTVKITS 192
EP HK + ++ T DVS DK + G+ E ++V PK MG+ + +
Sbjct: 412 EPVSHKTEDDKQGADTPDVSEDKKTTLAAEKDGNGESKDEVAAPKSSNDMGREEKIDSSK 471
Query: 191 ASKFSMMGQPIDKPKMAGLTVPLKKGELSGVYGLKRENKRPIPR 60
S+FS P + + L E+ V G + E K+PIPR
Sbjct: 472 ESEFSAASPPSAQEE------DLSWEEIEDV-GDEDEKKKPIPR 508
>07_01_0281 - 2067696-2068862
Length = 388
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 426 GSRRPGSREELVDEQRRELVLSAELHGLLEVSFGLSGEAADDVCGYRDAGD 578
G + GS +++D+ +R ++ + HG + S G SG +D G AGD
Sbjct: 207 GEKTIGSGSDILDDSKRGMINAGPQHGRITTSNGGSGSGSDKGKGVSYAGD 257
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -3
Query: 368 FFRSYEPYGHKVGETQEVLVTDVSHDKNYFVGHNEFYEQVLIPKEEKYMGKLVTVKITSA 189
F S +P G+ VG+ L +K +F H EF L E Y GKLV +
Sbjct: 171 FSFSRDPRGYDVGDVSSTLQLTKFVNK-WFSQHREFLSNPLYVGGESYAGKLVPFLLQKI 229
Query: 188 SK 183
S+
Sbjct: 230 SE 231
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = -3
Query: 233 EKYMGKLVTVKITSASKFSMMGQPIDKPKMAGLT----VPLKKGELSG 102
EK+ GK K+TSAS + I K K L+ VPL+K + G
Sbjct: 141 EKFKGKNSKTKVTSASMSQLFQNAIQKQKKKSLSKKKGVPLEKKSMKG 188
>09_04_0175 - 15353903-15354005,15354189-15354280,15354408-15354553,
15354661-15354814,15354885-15354985,15355055-15355145,
15355146-15355378,15355501-15355736,15355839-15356066,
15356150-15356370,15356869-15356990,15357125-15357451,
15357616-15357754,15357822-15357901,15358478-15358678,
15359431-15359757,15360144-15360897
Length = 1184
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 497 LCRKYKFPSLFINQFF-PRPGTPAAKMTRVPGQEVKKRTKLLSDFFRSYEPYGHKVGETQ 321
L + S F++++ PRPG + P + + + +L+ DF Y K+G +
Sbjct: 967 LVHSMNYLSPFLSEYVVPRPGK--LNFSDNPNELLFGKIELVPDFVNDYLSVQTKMGRSN 1024
Query: 320 EVLVTDVSHDKNYF 279
E + + +D YF
Sbjct: 1025 ETTLVIIVNDLGYF 1038
>02_01_0442 +
3196592-3196661,3198663-3198739,3199185-3199273,
3200101-3200220,3200970-3201086,3201290-3201433,
3201537-3201660,3201772-3201963,3202542-3202907
Length = 432
Score = 28.3 bits (60), Expect = 6.7
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -3
Query: 725 AVARIMRHPRVYKFLHVPVQSASDQVLSDMKREYTRADFEHVVDYLRKEVPGITIATDII 546
A+A+IM+ + +PV DQ+ D + D +H ++YL+ +V I DI
Sbjct: 55 AIAKIMKATLI-----LPVLK-QDQIWKDQTKFEDIFDVDHFINYLKDDV---RIVRDIP 105
Query: 545 CGFPTETE--ADFEETMQLCRKYKFPSLFINQFFPR 444
F + E + T++ KY +I+ PR
Sbjct: 106 DWFTEKDELFTSIKRTVKNIPKYASAQFYIDNVLPR 141
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 665 SASDQVLSDMKREYTRADF 609
SASD LS MK +Y RADF
Sbjct: 403 SASDSSLSVMKDQYNRADF 421
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 353 EPYGHKVGETQEVLVTDVSHDKNYFVGHNEFYEQVLIP 240
E +G VG+ +E LV V +++ YF G F +V +P
Sbjct: 70 EEFGFAVGDAEEELVVSVLNEEGYFGG--GFLGRVKVP 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,064
Number of Sequences: 37544
Number of extensions: 392631
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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