Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_G02
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical ...   235   2e-62
U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    31   0.85 
Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81097-4|CAB03176.1|  100|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.1 protein.
          Length = 425

 Score =  235 bits (576), Expect = 2e-62
 Identities = 107/193 (55%), Positives = 144/193 (74%), Gaps = 1/193 (0%)
 Frame = -3

Query: 737 EHLPAVARIMRHPRVYKFLHVPVQSASDQVLSDMKREYTRADFEHVVDYLRKEVPGITIA 558
           +HL  +A I+ HP+VY FLH+PVQSASD VL+DMKREY+R  FE + DY+   VP I IA
Sbjct: 161 DHLEEIAEILNHPKVYAFLHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIA 220

Query: 557 TDIICGFPTETEADFEETMQLCRKYKFPSLFINQFFPRPGTPAAKMTRVPGQEVKKRTKL 378
           TD+I  FPTET  DFEE+M+L RKYKFPSLFINQ++PR GTPAA++ ++   E +KRT  
Sbjct: 221 TDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAA 280

Query: 377 LSDFFRSYEPY-GHKVGETQEVLVTDVSHDKNYFVGHNEFYEQVLIPKEEKYMGKLVTVK 201
           +S+ FRSY  Y   ++GE   VLVT+V+ DK + VGHN+ YEQ+L+P E   MG+ + V+
Sbjct: 281 MSELFRSYTRYTDERIGELHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVR 340

Query: 200 ITSASKFSMMGQP 162
           +T+ +KFSM+ +P
Sbjct: 341 VTAVTKFSMISKP 353


>U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical
           protein F25B5.5 protein.
          Length = 547

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = -3

Query: 713 IMRHPRVYKFLHVPVQSASDQVLSDMKREYTRADFEHVVDYLRKEVPGITIATDIICGFP 534
           I   P + K LH+P QS  D+ L  M+R YTR  +  +VD +R  +P +++ +D I GF 
Sbjct: 351 IASRPNLCKQLHLPAQSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFC 410

Query: 533 TETEADFEETMQLCRKYKFPSLFINQFFPRPGTPA-AKMTRVPGQEVKKRTKL-LSDFFR 360
            ETE   + T+ L R  ++   F+  +  R  T A  ++T    ++VK R  L L+  FR
Sbjct: 411 GETEQAHQNTLSLIRAVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVFR 470


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 470 LFINQFFPRPGTPAAKMTRVPGQEVKKRTKLLSDFFRSYEPYGHKVGETQE 318
           + I++  P+P +P  K+    G+EVK   K    F    E    + GE +E
Sbjct: 228 VLISETTPKPDSPVEKVVEEVGEEVKPEMKPEEQFDEKQEETNAQTGEDEE 278


>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 443 PGTPAAKMTRVPGQEVKKRTKLLSDFFRSYEPY 345
           P T   K  + P QEVKK  K    ++++++PY
Sbjct: 345 PTTTTMKTIKYPIQEVKKEKKNYESYYKNWKPY 377


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 443 PGTPAAKMTRVPGQEVKKRTKLLSDFFRSYEPY 345
           P T   K  + P QEVKK  K    ++++++PY
Sbjct: 345 PTTTTMKTIKYPIQEVKKEKKNYESYYKNWKPY 377


>Z81097-4|CAB03176.1|  100|Caenorhabditis elegans Hypothetical
           protein K07A1.6 protein.
          Length = 100

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 599 PRVRSRLACIPSSCRTVPGHWPTAQGRG 682
           P  + +L CIP SCR  PG +   QG G
Sbjct: 62  PFSQCKLPCIPYSCRCNPGFYRDNQGTG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,657
Number of Sequences: 27780
Number of extensions: 323967
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)