Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F21
         (318 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5P2Q4 Cluster: Putative uncharacterized protein; n=1; ...    33   0.93 
UniRef50_Q1GWU1 Cluster: UvrD/REP helicase; n=1; Sphingopyxis al...    33   1.6  
UniRef50_Q9U228 Cluster: Putative uncharacterized protein mif-1;...    32   2.1  
UniRef50_Q2IMI9 Cluster: PBS lyase HEAT-like repeat protein; n=1...    31   3.8  
UniRef50_A6G7D2 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  
UniRef50_A6C1Y6 Cluster: Putative oxidase; n=1; Planctomyces mar...    31   6.6  
UniRef50_Q6YI46 Cluster: Transmembrane protein 64; n=20; Euteleo...    31   6.6  
UniRef50_A1T5U0 Cluster: PilT protein domain protein; n=1; Mycob...    30   8.7  

>UniRef50_A5P2Q4 Cluster: Putative uncharacterized protein; n=1;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 477

 Score = 33.5 bits (73), Expect = 0.93
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 314 AVAYLAECGFEEAAGASARVLGAMLNR-PEEEVRALLQEPAGALAGSLHPAALA 156
           A A LAE G   A GA+ R LGA L R P E+  AL+    G     L P  +A
Sbjct: 228 AQAALAEAGLAPAEGAALRALGAYLRRVPREQALALVDGLPGRFT-YLEPGGVA 280


>UniRef50_Q1GWU1 Cluster: UvrD/REP helicase; n=1; Sphingopyxis
           alaskensis|Rep: UvrD/REP helicase - Sphingopyxis
           alaskensis (Sphingomonas alaskensis)
          Length = 1166

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = -2

Query: 284 EEAAGASARVLGAMLNRPEEEVRALLQEPAGALAGSLHPAA 162
           +EA     RVLG +L+ P+EE +A L+  A ALA  L P A
Sbjct: 161 DEAGALQRRVLGDLLDAPDEE-QAALRAAAAALAQRLGPDA 200


>UniRef50_Q9U228 Cluster: Putative uncharacterized protein mif-1;
           n=2; Caenorhabditis|Rep: Putative uncharacterized
           protein mif-1 - Caenorhabditis elegans
          Length = 117

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 257 VLGAMLNRPEEEVRALLQEPAGAL-AGSLHPAALAVLHS 144
           VLG +LN+PE+ +     E  G L AG+  PA  AVL S
Sbjct: 27  VLGKLLNKPEQYMCIHFHEDQGILYAGTTEPAGFAVLKS 65


>UniRef50_Q2IMI9 Cluster: PBS lyase HEAT-like repeat protein; n=1;
           Anaeromyxobacter dehalogenans 2CP-C|Rep: PBS lyase
           HEAT-like repeat protein - Anaeromyxobacter dehalogenans
           (strain 2CP-C)
          Length = 834

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 287 FEEAAGASARVLGAMLNRPEEEVRALLQEPAGAL 186
           FEE  GA+A   GA+   PE EV ALL+   G+L
Sbjct: 540 FEEELGAAAPPSGAVRFDPEAEVTALLETDPGSL 573


>UniRef50_A6G7D2 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 101

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 77  NHFPNWSTILNRVLQFQSWLSDRSGV 154
           NH PNWS + NRV   + W  D  GV
Sbjct: 61  NHHPNWSNVYNRV-GVEIWAHDLGGV 85


>UniRef50_A6C1Y6 Cluster: Putative oxidase; n=1; Planctomyces maris
           DSM 8797|Rep: Putative oxidase - Planctomyces maris DSM
           8797
          Length = 993

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 293 CGFEEAAGASARVLGAMLNRPEEEV--RALLQEPAGALAGSLHPAALAVLHSYHLAKT 126
           CG      A +R+       P+EE   RA      G L+G+LHP  L+   + HLA T
Sbjct: 571 CGSCRRQDAGSRMCPVFRIAPDEEASPRAKANLFRGLLSGALHPNELSSAETKHLADT 628


>UniRef50_Q6YI46 Cluster: Transmembrane protein 64; n=20;
           Euteleostomi|Rep: Transmembrane protein 64 - Homo
           sapiens (Human)
          Length = 380

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -2

Query: 278 AAGASARVLGAMLNRPEEEVRALLQEPAGALAG 180
           AA AS  +LGA L R      + L EP GALAG
Sbjct: 58  AAAASGALLGAYLERHGPPEASELPEPGGALAG 90


>UniRef50_A1T5U0 Cluster: PilT protein domain protein; n=1;
           Mycobacterium vanbaalenii PYR-1|Rep: PilT protein domain
           protein - Mycobacterium vanbaalenii (strain DSM 7251 /
           PYR-1)
          Length = 134

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 212 LLQEPAGALAGSLHPAALAVLHSYHLA 132
           +L EP  ALAG++ PA L  L + HLA
Sbjct: 71  VLTEPIAALAGTMVPAELRTLDALHLA 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,972,593
Number of Sequences: 1657284
Number of extensions: 1595239
Number of successful extensions: 6749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6748
length of database: 575,637,011
effective HSP length: 82
effective length of database: 439,739,723
effective search space used: 10114013629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)