Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F21
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1486 + 30470838-30472460                                         30   0.45 
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439...    27   2.4  
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    27   3.2  
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701...    26   5.6  
08_02_1362 + 26406710-26408530                                         26   5.6  
11_01_0438 - 3349506-3351239                                           26   7.4  
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991...    26   7.4  

>06_03_1486 + 30470838-30472460
          Length = 540

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 314 AVAYLAECGFEEAAGASARVLGAMLNRPEEEVRALLQEPA 195
           A+A+ A C F+ AA + AR LG + +         + EPA
Sbjct: 83  AIAHNATCAFQGAASSPARALGRLPSSGRHAYTCAMPEPA 122


>01_01_0589 +
           4394154-4394513,4394641-4394762,4394862-4395057,
           4395275-4395392,4395499-4395546,4395691-4395791,
           4395893-4396000
          Length = 350

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 248 AMLNRPEEEVRALLQEPAGAL-AGSLHPAALAV 153
           A  +R  EE R +L   AG L  G + PAALAV
Sbjct: 5   ASFDRVPEEARRILHRLAGELWGGDVDPAALAV 37


>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 278 AAGASARVLGAMLNRPEEEVRALLQEPAGALA 183
           AAG  A V   M +  +E +R L+QE AG  A
Sbjct: 252 AAGVVATVTARMADTNQESLRQLIQEHAGEAA 283


>12_01_0772 -
           7016864-7017012,7017114-7017262,7017346-7017489,
           7017549-7017719,7017907-7018020,7018115-7018215,
           7018296-7018416,7018601-7018830,7019203-7019265,
           7019528-7019570,7019860-7019953,7020428-7020501,
           7020616-7020744,7020940-7021017,7021353-7021639
          Length = 648

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = -2

Query: 251 GAMLNRPEEEVRALLQEPAGALAGSLHPAALAVLH 147
           G  +  PEE   AL  E    LA  L PAAL  LH
Sbjct: 56  GDTMITPEEVAEALPWELLHRLASLLPPAALEALH 90


>08_02_1362 + 26406710-26408530
          Length = 606

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 281 EAAGASARVLGAMLNRPEEEVRALLQEPAGALA 183
           E A  +A  + A + R EEEVRALL   A  L+
Sbjct: 98  ELASRAAETVQAAMPRLEEEVRALLGSSARRLS 130


>11_01_0438 - 3349506-3351239
          Length = 577

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 311 VAYLAECGFEEAAGASARVLGAMLNRPEEEVRALLQEPAGA 189
           VA  +E G+ EAA     V G  ++   EEVR     PA A
Sbjct: 468 VAAPSEVGYGEAAAVRFEVPGGAVSGGPEEVRVAAVAPAFA 508


>01_05_0099 -
           18098169-18098390,18098878-18098972,18099063-18099131,
           18099277-18099352,18101412-18101524,18104137-18104185,
           18104540-18104572,18105446-18105552,18106892-18106990,
           18107122-18107203
          Length = 314

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 269 ASARVLGAMLNRPEEEVRALLQEPAGALAGSLH 171
           + ++V  +++  P E VR+ LQE   A  G++H
Sbjct: 227 SGSKVAASIITYPHEVVRSKLQEQGRARHGAVH 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,137,359
Number of Sequences: 37544
Number of extensions: 43954
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)