Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F19
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    33   0.034
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   5.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.2  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 482 KSTSVREQPRCCSHRNEGICSGERHLCLAVPKLHECLCRLSHCDRVERPS 631
           K +S  E+P CCS   +  CS ++  C +  K   C    + C   E+ S
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKS 278



 Score = 32.3 bits (70), Expect = 0.078
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 482 KSTSVREQPRCCSHRNEGICSGERHLCLAVPKLHECLCRLSHC 610
           KS    ++P CCS   +G CS E+  C +  K   C      C
Sbjct: 245 KSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPSC 287



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 497 REQPRCCSHRNEGICSGERHLCLAVPKLHECLCRLSHCDRVERPS 631
           +E+  CCS +    CS E+  C +  K   C      C   E+PS
Sbjct: 242 QEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTSEKPS 286


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 554 GALQNIYLHFDENNNGAVPVPMYFYKVVYDATARTAV-AFVTINSAFYNKTTT 399
           G L N+Y HF ++++ AV +P  F  V     A+  V A +   S   +K TT
Sbjct: 725 GCLGNMYSHFIKSSSFAVVLPAIFVLVPSGFAAQGGVSAGLDTASQITSKNTT 777


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 497  VPMYFYKVVYDATARTAVAFVTINSAFYNKTTTDEL 390
            +P    +VV+D   R  + F  +NS   +K  TDEL
Sbjct: 1141 LPPQMSRVVHDTEKRLNMLFDRLNSNVLSKPLTDEL 1176


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 572 PKLHECLCRLSHCDRVERPSSLARIP 649
           PKL +CLC   + + V  P SLA  P
Sbjct: 156 PKLLDCLCLYGYANIVWLPVSLATPP 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,980
Number of Sequences: 5004
Number of extensions: 61618
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)