Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_F19
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 31 1.0
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 30 2.3
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 29 4.1
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 29 5.4
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 29 5.4
09_04_0436 - 17558603-17559265,17559322-17559384 29 5.4
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 29 5.4
12_02_0675 + 21814048-21814368 28 7.1
07_01_0888 + 7398538-7399405,7400232-7400333,7400463-7400641,740... 28 7.1
04_01_0156 - 1780395-1780686,1780773-1781248,1781263-1781678,178... 28 7.1
01_06_1643 - 38878597-38878725,38878818-38878934,38879118-388794... 28 7.1
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333... 28 9.4
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 28 9.4
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 28 9.4
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 238 EPKILNIDNTHKLVIYKQLEHSTKMFTGVGH*MASLR 128
E K+LN + HKL++ + HSTK ++ H + +LR
Sbjct: 738 EAKLLNKSHLHKLILDWNVNHSTKDYSQEEHILENLR 774
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 29.9 bits (64), Expect = 2.3
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 4/155 (2%)
Frame = +2
Query: 305 SRSCERHLATATLTTSIADSNHRCRCKTVTRPLSSCCRTPSLSSRTLRLYELWHRRRPCK 484
S + ++HL + S S ++ C T++ + + P + T E+ PC
Sbjct: 365 SATLKQHLQCGSPDLSPTHSRNKDPCPTISSEVPNYTSEPLVEQDTYCNPEINSLEGPCS 424
Query: 485 STS---VREQPRCCSHRNEGICSGERHLCLAVPKLHECLCRLSHCDRVERPSSLARIPKP 655
S +E+ + C N + + H + ++ R S +R S +P
Sbjct: 425 KVSQLLEKEETKACPDANPLLKTDALHTIGSTERIRNLASRNS-TPLEQRSSDPHVLPCQ 483
Query: 656 PSRR-N*LSSIAGPCLCTGMWPSSALEEGSLREGP 757
SR S + P L TG+ P S LE L P
Sbjct: 484 RSRSVQPADSSSRPPLSTGILPDSLLEAVGLDHLP 518
>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 639 RGFQSPPVAGIDCPPLRGRVYVLECGPHLR 728
RGF S + CPPL+G Y+L C P ++
Sbjct: 1209 RGFTSCYIWA--CPPLKGEDYILYCHPEIQ 1236
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 311 SCERHLATATLTTSIADSNHR--CRCKTVTRPLSSC 412
+CE+ L+ + SI+D NHR R + + +P ++C
Sbjct: 291 NCEKELSCVVMNRSISDDNHRQSPRRERMNKPSTTC 326
>11_04_0340 -
16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 86 GNMLLPST*AMRN*SKRSHLVADARKHF 169
GN+ +P+ AM N K HL+ADA+ HF
Sbjct: 670 GNISVPA--AMNNLVKLRHLIADAKVHF 695
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +2
Query: 398 PLSSCCRTPSLSSRTLRLYELWHRRRPCKSTSVREQPRCCSHRNEGICSGER 553
P +S TPSLS RT H S +VR P CCS E I G++
Sbjct: 173 PNASATPTPSLSWRTTPPPCQRHPSSRA-SRAVRTTPPCCSSLAENIAQGKK 223
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 579 SFGTAKQRWRSPEHIPSFR*EQQ 511
SFG KQ+WR +++PS+ E Q
Sbjct: 678 SFGVLKQKWRILKYVPSYPPETQ 700
>12_02_0675 + 21814048-21814368
Length = 106
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 588 ACVDCHTVTELNDLLP*R--GFQSPPVAGIDCPPLRGRVYVLECGPHLRSKREVCARGQ 758
+C+ C + DL P G + PP G+ PP G V++ GP+ R ++ R Q
Sbjct: 6 SCIICGVGEKDCDLAPFTPVGSRGPPPGGL--PPTPGGVHLRRKGPYRRPRKPTEVRSQ 62
>07_01_0888 +
7398538-7399405,7400232-7400333,7400463-7400641,
7400899-7400959,7401207-7401444,7401649-7401802,
7401971-7402249
Length = 626
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 353 YSWLTWRSRDGAHSFCC 303
Y+WL WRS G CC
Sbjct: 534 YAWLLWRSGQGHELICC 550
>04_01_0156 -
1780395-1780686,1780773-1781248,1781263-1781678,
1781904-1782111
Length = 463
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 302 RSRSCERHLATATLTTSIADSNHRCRCKTVTRPLSSCCR 418
R + ER + T L + A+ +H C T + P + CR
Sbjct: 398 RHKEDERRVVTDALKKANAEIDHGCSSSTTSTPCGATCR 436
>01_06_1643 -
38878597-38878725,38878818-38878934,38879118-38879450,
38880366-38880758
Length = 323
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -2
Query: 476 VVYDATARTAVAFVTINS 423
VV+DA ARTA+AFVT+ +
Sbjct: 84 VVFDAGARTALAFVTLRA 101
>12_02_1283 -
27532143-27532517,27532602-27532906,27533053-27533311,
27534412-27534618,27534726-27535181,27535866-27535963,
27536657-27536785,27537371-27537605,27538932-27539039,
27539110-27539160,27539261-27539445,27540207-27540274,
27541535-27541600,27541678-27541730,27542536-27542653,
27542743-27542844,27543525-27543682,27543763-27543840,
27543978-27544069,27544308-27544458
Length = 1097
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 444 SVRDDKLGVLQQDDNGRVTVLQRHL*FESAILVVNVAVARWRSQLLLRLH 295
++RD L ++ G T+L R + I +V++ V +W SQ L H
Sbjct: 677 AMRDPLLSSTKETVKGHGTILYREGSRPTGIWLVSIGVVKWTSQRLSSRH 726
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +2
Query: 311 SCERHLATATLTTSIADSNHRCRCKTVTRPLSSCCRTPSLSSRTLRL---YELWHRRRPC 481
+C T T TT + T P L+S +L L ++ WHR R
Sbjct: 47 ACSPPTTTHTTTTVTTTTTTASPAPVTTSPADVAWLKSQLASNSLPLLASHDAWHRLRKG 106
Query: 482 KSTSVREQPRCCSHRNEGI 538
+ REQ +R+ GI
Sbjct: 107 INPRTREQQLFDINRHHGI 125
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 639 RGFQSPPVAGIDCPPLRGRVYVLECGPHLR 728
RGF S + CPP++G Y+L C P ++
Sbjct: 1108 RGFTSCYIWA--CPPVKGEDYILYCHPEIQ 1135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,849,622
Number of Sequences: 37544
Number of extensions: 424177
Number of successful extensions: 1305
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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