Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_F16
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 88 5e-18
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398... 64 8e-11
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 30 1.5
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 30 1.5
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 30 1.5
06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268... 29 2.6
11_01_0776 + 6476743-6477539,6478658-6479481,6479803-6480790,648... 29 3.5
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 28 4.6
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 27 8.0
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 27 8.0
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 27 8.0
08_02_0945 - 22871753-22872232,22872474-22872526,22872611-228728... 27 8.0
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 27 8.0
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 27 8.0
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 87.8 bits (208), Expect = 5e-18
Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 2/164 (1%)
Frame = -2
Query: 572 CXRYWPLSGQEERYD--NLLVRSISESHYEDYLIRELDVCDENKCCRAVYQYQFTAWPDH 399
C Y PL Q E Y N+ + + ++ +L + C+E+ +V ++ WPDH
Sbjct: 170 CDEYLPLRKQREAYGKYNVKITNAKRDSHQLWLRDVMVQCNESSRVHSVRHIEYPDWPDH 229
Query: 398 STPPEPDRIISFMEDINRRMFLITQEKNAPDQNVICVHCSAGVGRTGTFIVLDILLDKIK 219
P D + R +L +N P ++ I VHCSAG+GRTG +I + ++++
Sbjct: 230 GVPTNTDAVRQI------RKWL----QNTPMEHPIVVHCSAGIGRTGAYITIHSTIERL- 278
Query: 218 SSGFNCDIDVHNTVKLVRAQRSGMVQNKTQYRFIYLALQDYIEN 87
G + TVK +R QR GMVQ + QY F Y A+ D +++
Sbjct: 279 LLGDKSSYHLDETVKTLRTQRVGMVQTEKQYMFCYRAIADELKD 322
>11_01_0514 -
3985204-3985266,3985920-3986061,3986144-3986276,
3986703-3986817,3987496-3987549,3987787-3987912,
3989179-3989319,3989470-3989552,3989643-3989733,
3990318-3990405,3992705-3992832
Length = 387
Score = 64.1 bits (149), Expect = 8e-11
Identities = 36/104 (34%), Positives = 57/104 (54%)
Frame = -2
Query: 440 RAVYQYQFTAWPDHSTPPEPDRIISFMEDINRRMFLITQEKNAPDQNVICVHCSAGVGRT 261
R V ++ WPDH P + +F+ I +R++ I P ++ I HCSAG+GRT
Sbjct: 277 RHVLHILYSDWPDHGVPHDS----AFVRKILKRLYGI------PKEHPIVAHCSAGIGRT 326
Query: 260 GTFIVLDILLDKIKSSGFNCDIDVHNTVKLVRAQRSGMVQNKTQ 129
G +I + +++I + +D+ TVK R+QR GMVQ + Q
Sbjct: 327 GAYITIHNTIERILLGDMSA-LDLSKTVKKFRSQRPGMVQTEEQ 369
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = -2
Query: 305 QNVICVHCSAGVGRTGTFIVLDILLDKIKSSGFNCDIDVHNTVKLVRAQRSGMVQNKTQY 126
+NV+ VHC AG RTG I +L K + I+ +N + V + ++ ++ +Y
Sbjct: 258 ENVVVVHCKAGKARTGLMISSLLLYLKFFPTAEE-SIEYYNQKRCVDG-KGLILPSQIRY 315
Query: 125 RFIYLALQDYIENKNIKLRR---KGYRPDIC 42
+ + Y +N RR +G+R C
Sbjct: 316 VKYFERILTYFNGENQPPRRCMLRGFRLHRC 346
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = -2
Query: 389 PEPDRIISFMEDINRRMFLITQEKNAPDQNVICVHCSAGVGRTGTFIVLDILLDKIKS 216
P+ + + +F+ ++ M + ++K + + I VHC+ G RTG IV ++ ++ S
Sbjct: 172 PDNESVNTFVYEV---MAFLDRQKQSRNPKYILVHCTHGHNRTGFMIVHYLMRTQLSS 226
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 404 DHSTPPEPDRIIS-FMEDINRRMFLITQEKNAPDQNVICVHCSAGVGRTGTFIV 246
DH P D + + ++DI + + I +NA + + VHC AG GR+ T ++
Sbjct: 124 DHLIIPTRDYLFAPALQDICQAIDFI--HRNASEGGITYVHCKAGRGRSTTIVL 175
>06_01_0372 +
2684208-2684390,2684867-2684968,2685197-2685290,
2685450-2685532,2685684-2685773,2686931-2687173
Length = 264
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = -2
Query: 404 DHSTPPEPDRIIS-FMEDINRRMFLITQEKNAPDQNVICVHCSAGVGRTGTFIVLDILLD 228
DH P D + + + DI+R + I +NA + +HC AG GR+ T IVL L+
Sbjct: 100 DHLVIPTRDYMFAPSLVDISRAVDFI--HRNASCGRMTYIHCKAGRGRS-TTIVLCYLV- 155
Query: 227 KIKSSGFNCDIDVHNTVKLVRAQRSGMVQNKTQYRFI 117
K K ++ + VR++R+ ++ ++Q+R +
Sbjct: 156 KYK------NMTPSTAFEHVRSKRARVLLTRSQWRVV 186
>11_01_0776 +
6476743-6477539,6478658-6479481,6479803-6480790,
6482633-6483545
Length = 1173
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = -2
Query: 521 LVRSISESHYEDYLIRELDVCDENKCCRAVYQYQFTAWPDHSTPPEPDRIISFMEDINRR 342
LVR SE H E Y + + + V FTA H P P R + M++ +
Sbjct: 122 LVREASERH-ERYQLGDGRASSSSSSSHRV----FTA---HGQVPAPCRNLVGMDEPKTK 173
Query: 341 MFLITQEKNAPDQNVICVHCSAGVGRT 261
+ + ++ V+C+ SAG+G+T
Sbjct: 174 LTNMLTDEAELHMKVVCILGSAGIGKT 200
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 341 MFLITQEKNAPDQNVICVHCSAGVGRTGTFIV 246
M + ++K + + I VHC+ G RTG I+
Sbjct: 213 MMFLDRQKQSKNPKYILVHCTHGHNRTGFMII 244
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 296 ICVHCSAGVGRTGTFIVLDILLDKIKS 216
+ VHC AGV R+ T IV ++ + KS
Sbjct: 129 VLVHCFAGVSRSATIIVAYLMRTEQKS 155
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -2
Query: 323 EKNAPDQNVICVHCSAGVGRTGTFIVLDILLDKIKSSGFNC-DIDVHNTVKLVRAQRSGM 147
+K++ Q +C +G G F++ DIL + + C + + T L+R +R+
Sbjct: 78 QKDSVKQFFQVYNCWSGFMGRGNFLLPDILTNMANENALRCARVALQGTSPLLRRRRA-- 135
Query: 146 VQNKTQYRFIYLALQDYIENKNIKLRRKGYR 54
T++R+ + L EN ++ + + +R
Sbjct: 136 -DPNTRHRYGFAPLHMAAENFSVDMVKLLFR 165
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 296 ICVHCSAGVGRTGTFIVLDILLDKIKS 216
+ VHC AGV R+ T IV ++ + KS
Sbjct: 129 VLVHCFAGVSRSATIIVAYLMRTEQKS 155
>08_02_0945 -
22871753-22872232,22872474-22872526,22872611-22872864,
22873048-22873086,22873160-22873374,22873467-22873667,
22874876-22875080,22875487-22875584
Length = 514
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -2
Query: 308 DQNVICVHCSAGVGRTGTF----IVLDILLDKIKSSGFNCDID 192
D+N ICV G TG F ++ ++L +K K +G + ++D
Sbjct: 204 DENTICVAAILGSTLTGEFEDVKLLNNLLTEKNKETGLSLEVD 246
>06_01_0421 -
3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 390 TGAGQDNLIYGGYKQENVSNHTREKCTRSECDLRALFRG 274
TG Q+N+++G E T EKC+ E DL L G
Sbjct: 693 TGTVQENILFGSLMDEQRYKETLEKCS-LEKDLAMLPHG 730
>05_03_0369 -
13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -2
Query: 557 PLSGQEERYDNLL----VRSISESHYEDYLIRELDVCDENKCCRAVYQYQF 417
P+S +++R L V ++ S +D LI LD ENKC ++ Y+Y F
Sbjct: 478 PISQKDDRLVTLTMHDPVHDMARSVIDDELI-VLDDTKENKCGQSTYRYVF 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,358,637
Number of Sequences: 37544
Number of extensions: 353313
Number of successful extensions: 798
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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