Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F16
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 24  LVMEVATDVRPVALPSQFNIFVFNVILKGEIYESILGFILYH 149
           L +E  TD+  V  P+  + FVF  +    I+ +I+ F + H
Sbjct: 259 LGLEARTDLPKVPYPTALDFFVF--LSFAFIFATIIQFAVVH 298


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +1

Query: 202 QLKPDDLI---LSRRMSKTMNVPVLPTPAEQCTQIT 300
           QLK  D+I   + R  +   +    P+PAEQC   T
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPAEQCASTT 755


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 434 VYQYQFTAWPDHSTPPEPDR 375
           +YQ     +   +TPP+PDR
Sbjct: 239 LYQQPERHYERRATPPQPDR 258


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 419 FTAWPDHSTPPEPDRIISFMED 354
           F  +P  S PP PD I  +  D
Sbjct: 656 FDEYPPDSDPPPPDDISGWDND 677


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +1

Query: 235  RMSKTMNVPVLPTPAEQCTQITF*SGAFFSCVIRN 339
            R   T N+ +LP+     + +    G  ++C + N
Sbjct: 1354 RTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVEN 1388


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +1

Query: 235  RMSKTMNVPVLPTPAEQCTQITF*SGAFFSCVIRN 339
            R   T N+ +LP+     + +    G  ++C + N
Sbjct: 1350 RTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVEN 1384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,877
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)