Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F15
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.46 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.2  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   3.2  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   4.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   7.4  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   7.4  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   7.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.8  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 410 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKEN 267
           K  E  E EWN+ +N+     E+A+E E T     Q Q+LL +  +EN
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 368 NQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 249
           N  + + ED++  E+ E+   Q + L +Q + ENV ++LE
Sbjct: 785 NTAILSFEDSLRRERDEKSTLQQKCLNLQYEYENVRIELE 824


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 59  VRDATVQSLLLLVRSDGLGHV 121
           +RDA+ Q+LL+L +SD L +V
Sbjct: 108 IRDASHQALLILAKSDALDYV 128


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 404 VEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQ 282
           V+ T +  +E   QTV+ L  +IEG     W A  ++L+ +
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQLICE 190


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 447 VSYIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 548
           VS +  D Q QS V   LHY + + +   C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 551 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 381
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 155 RPEAHGRLDSEQRDQGHHSGPGE-AGSGPLHRGPGLPWP 42
           RP+ H   D E R+   H  PGE     P+H  PG   P
Sbjct: 184 RPKHH-EFDDEDREFPAHHEPGEHMPPPPMHHKPGEHMP 221


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/74 (20%), Positives = 37/74 (50%)
 Frame = -3

Query: 395 TENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAXQGEAHVRL 216
           T N W +G +   + L ++++ ++ E+      E+     ++  ++Q + + +GE+H+  
Sbjct: 439 TRNIWEKGLSIIEEQL-NSLQPKQQEKVVDSELEVDENLLEDATMIQDDESHEGESHLEN 497

Query: 215 LRGEAASGLPAREV 174
              E    +PA E+
Sbjct: 498 SLSEYVDSVPAEEI 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,498
Number of Sequences: 5004
Number of extensions: 63379
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)