Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_F15
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b ... 58 6e-09
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 58 1e-08
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 33 0.19
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 33 0.19
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 33 0.19
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 33 0.19
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 33 0.19
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.25
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.25
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.25
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 31 0.75
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 31 1.3
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical p... 29 3.0
Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 29 3.0
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 29 4.0
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 29 4.0
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 29 4.0
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 4.0
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 4.0
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 29 4.0
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 29 4.0
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 29 4.0
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.0
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 7.0
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 7.0
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 9.3
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 9.3
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 28 9.3
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 28 9.3
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical... 28 9.3
AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical... 28 9.3
>U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b
homolog protein 2 protein.
Length = 305
Score = 58.4 bits (135), Expect = 6e-09
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Frame = -3
Query: 656 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGL 477
ARP+ P K RL +P+ WF F TGV+GPY F GL +L +KE++V E + + +
Sbjct: 99 ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTV 156
Query: 476 SLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQG- 300
++ + G K+ L + N + +G Q + L++A+E +KT + +
Sbjct: 157 GWILFYLLVTRTAGYKIDQGLYNGYQERVN-FFKGLIQ--EDLKEAVEFKKTSAKQTESL 213
Query: 299 ---QELLIQAKKENVLLQLEA 246
+E A KE++ LQLEA
Sbjct: 214 NSIKESYPTALKESMALQLEA 234
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 57.6 bits (133), Expect = 1e-08
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Frame = -3
Query: 635 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVY 456
P K RL +P+ WF F TG +GPY F GL +L +KE++V E + + + ++
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161
Query: 455 VAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWR----AQGQELL 288
+ G K+ A L K+ + + +G Q + L++A++ KT + A +E +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQERVG-FFKGLIQ--EDLKEAVDFRKTSAAQTASFAALKEGM 218
Query: 287 IQAKKENVLLQLEAA 243
+ K+++ LQLEAA
Sbjct: 219 PTSLKDSMQLQLEAA 233
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDS---EQRDQGHHSGPGEAGSGPLHRGPGLPW-PG 39
+ ASG P + GAP +P A + +S G PG AGS GPG P PG
Sbjct: 191 KGASGAPGNPGQAGAPGQPGADAQSESIPGAPGQAGPQGPPGPAGSPGAPGGPGQPGAPG 250
Query: 38 SE 33
+
Sbjct: 251 QK 252
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSEQRDQ--GHHSGPGEAGSGPLHRGPGLPWP 42
+ A G+P R G P P G +D + + G+ PGE G G + PGLP P
Sbjct: 128 DGAPGIPGRPGPPGMPGFPGPPG-MDGLKGEPAIGYAGAPGEKGDGGMPGMPGLPGP 183
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 197 SGLPAREVERGAPS--RPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGSER 30
SG P + + G P + G L D+G PG+ G PGLP G E+
Sbjct: 1146 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEK 1203
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 167 GAPSRPEAHGRLDSE--QRDQGHHSGPGEAGSGPLHRGPGLP-WPGSE 33
GAP P GR + G+ PG AG GPGLP +PG+E
Sbjct: 366 GAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNE 413
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -3
Query: 257 QLEAAXQGEAHVRLLRG-EAASGLPAREVERGAPSRPEAHGR-----LDSEQRDQGHHSG 96
Q+ A G+ + L G + G P R E G P P G L GH
Sbjct: 722 QVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHPGV 781
Query: 95 PGEAGSGPLHRGPGLPWP 42
PG+ G G + PG+P P
Sbjct: 782 PGDKGFGGVPGLPGIPGP 799
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSEQRDQ--GHHSGPGEAGSGPLHRGPGLPWP 42
+ A G+P R G P P G +D + + G+ PGE G G + PGLP P
Sbjct: 128 DGAPGIPGRPGPPGMPGFPGPPG-MDGLKGEPAIGYAGAPGEKGDGGMPGMPGLPGP 183
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 197 SGLPAREVERGAPS--RPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGSER 30
SG P + + G P + G L D+G PG+ G PGLP G E+
Sbjct: 1145 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEK 1202
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 167 GAPSRPEAHGRLDSE--QRDQGHHSGPGEAGSGPLHRGPGLP-WPGSE 33
GAP P GR + G+ PG AG GPGLP +PG+E
Sbjct: 365 GAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNE 412
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -3
Query: 257 QLEAAXQGEAHVRLLRG-EAASGLPAREVERGAPSRPEAHGR-----LDSEQRDQGHHSG 96
Q+ A G+ + L G + G P R E G P P G L GH
Sbjct: 721 QVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHPGV 780
Query: 95 PGEAGSGPLHRGPGLPWP 42
PG+ G G + PG+P P
Sbjct: 781 PGDKGFGGVPGLPGIPGP 798
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSEQRDQ--GHHSGPGEAGSGPLHRGPGLPWP 42
+ A G+P R G P P G +D + + G+ PGE G G + PGLP P
Sbjct: 128 DGAPGIPGRPGPPGMPGFPGPPG-MDGLKGEPAIGYAGAPGEKGDGGMPGMPGLPGP 183
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 197 SGLPAREVERGAPS--RPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGSER 30
SG P + + G P + G L D+G PG+ G PGLP G E+
Sbjct: 1145 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEK 1202
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 167 GAPSRPEAHGRLDSE--QRDQGHHSGPGEAGSGPLHRGPGLP-WPGSE 33
GAP P GR + G+ PG AG GPGLP +PG+E
Sbjct: 365 GAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNE 412
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -3
Query: 257 QLEAAXQGEAHVRLLRG-EAASGLPAREVERGAPSRPEAHGR-----LDSEQRDQGHHSG 96
Q+ A G+ + L G + G P R E G P P G L GH
Sbjct: 721 QVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHPGV 780
Query: 95 PGEAGSGPLHRGPGLPWP 42
PG+ G G + PG+P P
Sbjct: 781 PGDKGFGGVPGLPGIPGP 798
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSEQRDQ--GHHSGPGEAGSGPLHRGPGLPWP 42
+ A G+P R G P P G +D + + G+ PGE G G + PGLP P
Sbjct: 128 DGAPGIPGRPGPPGMPGFPGPPG-MDGLKGEPAIGYAGAPGEKGDGGMPGMPGLPGP 183
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 197 SGLPAREVERGAPS--RPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGSER 30
SG P + + G P + G L D+G PG+ G PGLP G E+
Sbjct: 1146 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEK 1203
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 167 GAPSRPEAHGRLDSE--QRDQGHHSGPGEAGSGPLHRGPGLP-WPGSE 33
GAP P GR + G+ PG AG GPGLP +PG+E
Sbjct: 366 GAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNE 413
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -3
Query: 257 QLEAAXQGEAHVRLLRG-EAASGLPAREVERGAPSRPEAHGR-----LDSEQRDQGHHSG 96
Q+ A G+ + L G + G P R E G P P G L GH
Sbjct: 722 QVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHPGV 781
Query: 95 PGEAGSGPLHRGPGLPWP 42
PG+ G G + PG+P P
Sbjct: 782 PGDKGFGGVPGLPGIPGP 799
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSEQRDQ--GHHSGPGEAGSGPLHRGPGLPWP 42
+ A G+P R G P P G +D + + G+ PGE G G + PGLP P
Sbjct: 128 DGAPGIPGRPGPPGMPGFPGPPG-MDGLKGEPAIGYAGAPGEKGDGGMPGMPGLPGP 183
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -3
Query: 197 SGLPAREVERGAPS--RPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGSER 30
SG P + + G P + G L D+G PG+ G PGLP G E+
Sbjct: 1182 SGAPGLDGQPGVPGIRGDKGQGGLPGIPGDRGMDGYPGQKGENGYPGQPGLPGLGGEK 1239
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 167 GAPSRPEAHGRLDSE--QRDQGHHSGPGEAGSGPLHRGPGLP-WPGSE 33
GAP P GR + G+ PG AG GPGLP +PG+E
Sbjct: 402 GAPGPPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNE 449
Score = 28.7 bits (61), Expect = 5.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -3
Query: 257 QLEAAXQGEAHVRLLRG-EAASGLPAREVERGAPSRPEAHGR-----LDSEQRDQGHHSG 96
Q+ A G+ + L G + G P R E G P P G L GH
Sbjct: 758 QVNPAPPGQPGLPGLPGTKGEGGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHPGV 817
Query: 95 PGEAGSGPLHRGPGLPWP 42
PG+ G G + PG+P P
Sbjct: 818 PGDKGFGGVPGLPGIPGP 835
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 209 GEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLP 48
G +GLP+R+ + RP S + H GPG++ S GP P
Sbjct: 434 GSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGP 487
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 209 GEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLP 48
G +GLP+R+ + RP S + H GPG++ S GP P
Sbjct: 455 GSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGP 508
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 209 GEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLP 48
G +GLP+R+ + RP S + H GPG++ S GP P
Sbjct: 440 GSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESREGPRGP 493
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGS 36
+AA G P + +G P P A +S++ +G PGE G P GP P PGS
Sbjct: 177 DAAPGEPGPKGPKGPPGAPGAPEHQESQECPRGEPLIPGEPGP-PGEAGPQGP-PGS 231
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -3
Query: 227 HVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGS-GPLHR--GP 57
H + + GEA G P R+ E G P G + G PG+ G+ GP + P
Sbjct: 242 HGKTIAGEAPPGPPGRQGEMGPQGPPGPPGPRGKDGAG-GEKGAPGDQGNPGPYGKPGQP 300
Query: 56 GLPWP 42
G P P
Sbjct: 301 GAPGP 305
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -3
Query: 419 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQ----WRAQGQELLIQAKKENVLLQL 252
W DK E +W + +T E I+ E E W+ +++L + K+EN LL+L
Sbjct: 447 WSDKRNEENAIKWKQ---ETDNIPEVVIKNEDDETDVLYWKLSDEDVLERCKEENELLKL 503
Query: 251 EAAXQGEAHVRLLRGEAASGLPAREVERGA 162
+ + + + +GE A + E A
Sbjct: 504 DLLTEHQLNKTNDKGETVLHQAAMKSENEA 533
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -3
Query: 197 SGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRGPGLPWPGSER 30
+G P R+ G P P GR R G PG AG PG P ER
Sbjct: 194 AGQPGRDGNPGQPGHPGKDGR-----RGHGSPGAPGRAGQPGRQGAPGNPGRPGER 244
>Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 516 LAAQVCCQTHTKSVRTRNTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 662
LAA+ C T +V+ + V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 516 LAAQVCCQTHTKSVRTRNTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 662
LAA+ C T +V+ + V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGP 72
G P + + GAP P G E QGH PG AG GP
Sbjct: 159 GAPGEDGQNGAPGSPGGPG----ETGPQGHQGKPGRAGPRGP 196
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 725 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 770
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 328 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 373
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 688 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 733
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 200 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 245
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 725 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 770
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 328 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 373
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 688 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 733
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 215 LRGEAA-SGLPAREVERGAPSRPEAHGRL--DSEQRDQGHHSGPGEAGSGPLHRGPGLP 48
L+GE+ GLP R+ G P +P G D G PG+ G PG+P
Sbjct: 854 LKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIP 912
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 215 LRGEAA-SGLPAREVERGAPSRPEAHGRL--DSEQRDQGHHSGPGEAGSGPLHRGPGLP 48
L+GE+ GLP R+ G P +P G D G PG+ G PG+P
Sbjct: 1111 LKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIP 1169
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = -3
Query: 239 QGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRG 60
+GEA + E +G+P + + G P P GR S+ G+ GPG+ G L
Sbjct: 605 KGEAGEIVGPMENPAGIPGLKGDHGLPGLP---GRPGSDGLP-GYPGGPGQNGFPGLQGE 660
Query: 59 PGLPWPGSERKR 24
PGL +R R
Sbjct: 661 PGLAGIDGKRGR 672
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -3
Query: 215 LRGEAA-SGLPAREVERGAPSRPEAHGRL--DSEQRDQGHHSGPGEAGSGPLHRGPGLP 48
L+GE+ GLP R+ G P +P G D G PG+ G PG+P
Sbjct: 1110 LKGESGLPGLPGRQGNDGIPGQPGLEGECGEDGFPGSPGQPGYPGQQGREGEKGYPGIP 1168
Score = 28.3 bits (60), Expect = 7.0
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = -3
Query: 239 QGEAHVRLLRGEAASGLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAGSGPLHRG 60
+GEA + E +G+P + + G P P GR S+ G+ GPG+ G L
Sbjct: 604 KGEAGEIVGPMENPAGIPGLKGDHGLPGLP---GRPGSDGLP-GYPGGPGQNGFPGLQGE 659
Query: 59 PGLPWPGSERKR 24
PGL +R R
Sbjct: 660 PGLAGIDGKRGR 671
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 200 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 245
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 328 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 373
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDSEQRDQGHHSGPGEAG-SGPLHRGPGLPWPGS 36
G P + ERGA P HG + DQG PG G +GP PG P G+
Sbjct: 667 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP----PGPPGSGT 712
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSE---QRDQGHHSGPGEAGSGPLHRGPG 54
+ A G P + GAP +P + + +S G PG AGS GPG
Sbjct: 191 KGAPGAPGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPG 244
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSE---QRDQGHHSGPGEAGSGPLHRGPG 54
+ A G P + GAP +P + + +S G PG AGS GPG
Sbjct: 191 KGAPGAPGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPG 244
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 206 EAASGLPAREVERGAPSRPEAHGRLDSE---QRDQGHHSGPGEAGSGPLHRGPG 54
+ A G P + GAP +P + + +S G PG AGS GPG
Sbjct: 191 KGAPGAPGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPG 244
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -3
Query: 410 KEVEATENEWNEGRNQTVKALEDA-IEGEKT----EQWRAQGQELLIQAKK 273
KE+EA +W + + K L + +E +T E+W+ + QE+ IQ K+
Sbjct: 250 KEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQ 300
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Frame = -3
Query: 209 GEAASGLPAREVERGAPSRP---EAHGRLDSEQRDQGHHSGPGEAG-SGP--------LH 66
G A G + +RGAP P + GR + + Q + PG+AG GP
Sbjct: 186 GSGAPGPAGPKGQRGAPGHPGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPPGPSGAPGAP 245
Query: 65 RGPGLPWPGSER 30
GPG P P ++
Sbjct: 246 GGPGYPGPPGQK 257
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +1
Query: 61 PRCNGPEPASPGPE*WPWSRCSLSSRPCASGRDGAP 168
P CN P PGP+ P RP GR G+P
Sbjct: 135 PPCNPCPPGPPGPQ-GPTGNSGQPGRPGNPGRPGSP 169
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -3
Query: 248 AAXQGEAHVRLLRGEAASGLPA-REVERGAPSRPEAHGRLDSEQRDQGHHS--GPGEAGS 78
A G +L A G+P R ++RG+ + R++ + Q S G G G
Sbjct: 2229 APAPGTVAAMVLPNRGAGGIPQMRSLQRGSYTGGGGQQRINVMVQPQQMRSNNGGGVGGQ 2288
Query: 77 GPLHRGPGLP 48
G L GPG P
Sbjct: 2289 GGLQGGPGGP 2298
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = -3
Query: 248 AAXQGEAHVRLLRGEAASGLPA-REVERGAPSRPEAHGRLDSEQRDQGHHS--GPGEAGS 78
A G +L A G+P R ++RG+ + R++ + Q S G G G
Sbjct: 2229 APAPGTVAAMVLPNRGAGGIPQMRSLQRGSYTGGGGQQRINVMVQPQQMRSNNGGGVGGQ 2288
Query: 77 GPLHRGPGLP 48
G L GPG P
Sbjct: 2289 GGLQGGPGGP 2298
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 31 RSLPGQ-GKPGPRCNGPEPASPGPE*WPWSRCSLSSRPCASGRDGAP 168
R PG G GPR N P + GP P + P G DG P
Sbjct: 244 RGAPGATGSQGPRGNDGRPGNKGPAGPPGDQ-GFDGAPGGPGADGEP 289
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -3
Query: 194 GLPAREVERGAPSRPEAHGRLDS---EQRDQGHHSGPGEAGSGPLHRGPGLPW-PGSE 33
G P + GAP +P + S G PG +G+ GPG P PGS+
Sbjct: 179 GAPGHPGQAGAPGQPGVDAQSQSTPGAPGQAGPQGPPGSSGAPGAPGGPGFPGAPGSK 236
>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
protein Y51A2D.7b protein.
Length = 1057
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 293 LLIQAKKENVLLQLEAAXQGEAHVRLLRGEAASGLPARE 177
+L++ + V+ QL A H+ +LRG+ GLPA +
Sbjct: 976 MLVEIWRFFVVRQLNTATIDTYHMEILRGDVDEGLPAEK 1014
>AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical
protein Y51A2D.7a protein.
Length = 989
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 293 LLIQAKKENVLLQLEAAXQGEAHVRLLRGEAASGLPARE 177
+L++ + V+ QL A H+ +LRG+ GLPA +
Sbjct: 908 MLVEIWRFFVVRQLNTATIDTYHMEILRGDVDEGLPAEK 946
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,274,209
Number of Sequences: 27780
Number of extensions: 400840
Number of successful extensions: 1885
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1856
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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