Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F11
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LFG7 Cluster: Putative uncharacterized protein; n=2; ...    34   3.9  
UniRef50_Q4MYZ5 Cluster: Putative uncharacterized protein; n=2; ...    33   5.2  
UniRef50_A0M5D3 Cluster: Membrane protein; n=1; Gramella forseti...    33   9.0  

>UniRef50_Q6LFG7 Cluster: Putative uncharacterized protein; n=2;
            Eukaryota|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2017

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = -3

Query: 370  MNLTVINFI---SKYCYTKFIYYYLKIDKL*RYSNFWL--FQTKLMLFTSTLQFIHIY 212
            M  T +NF    +K CY K I Y+L ++   +YSNF+L  F  K +LF+++     I+
Sbjct: 1943 MCFTCLNFSFRNNKSCYNKLINYFLNLNT--KYSNFYLLFFDKKHLLFSASYNLSVIF 1998


>UniRef50_Q4MYZ5 Cluster: Putative uncharacterized protein; n=2;
            Theileria|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 1723

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 322  FIYYYLKIDKL*RYSNFWLFQTKLMLFTSTLQFIHIYYFCF*LFRHKYTNTNALQ 158
            ++Y  L   KL +Y N +LF  K +L T    + H Y+F +  F ++Y N   L+
Sbjct: 1630 YVYNSLINIKLGKYPNSFLF-IKNLLLTVLFNWYHKYFFTYNFFIYQYNNNQILE 1683


>UniRef50_A0M5D3 Cluster: Membrane protein; n=1; Gramella forsetii
           KT0803|Rep: Membrane protein - Gramella forsetii (strain
           KT0803)
          Length = 279

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -3

Query: 496 FQYYLWLPTNALLFVAWTEATGRGGLPYS*YYKDQMERAKLSMNLTVINFISKYCYTKFI 317
           F++ L    N LLF+ +   TG   + Y+   K  +    L+ NL +I   S +C+   +
Sbjct: 31  FEHDLIPDLNLLLFIFFASITGYNFVKYAGIAK--LHHLSLAKNLKIIQIFSCFCFIALV 88

Query: 316 YYYLKI 299
           Y+  ++
Sbjct: 89  YFCFQL 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,460,873
Number of Sequences: 1657284
Number of extensions: 8359796
Number of successful extensions: 16453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16444
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)