Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F11
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   6.0  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   8.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.0  

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 492 NIIYGYQLMPYSLSLGRRLQVEE 424
           +I  G+  + YSL LGRR+ V+E
Sbjct: 193 HISSGFAALAYSLCLGRRIVVDE 215


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
 Frame = -3

Query: 529 TSYLPKLS--PNKFQYYLWLPTNALLFVA--------WTEATGRGGLPYS*YYKDQMERA 380
           +SY  KL   PN+ Q Y+W   +  +F A        +   T R  LP    YK    R 
Sbjct: 327 SSYQTKLCILPNQIQIYVWYGASISIFFALILLRTAIFFFGTDRYSLP---LYKTHARRF 383

Query: 379 KLSMNLTVINFISKYCYTKFIYY 311
            LS  + +   I +   + FI Y
Sbjct: 384 SLSTTIHLFKKIVRITLSTFISY 406


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 400  KDQMERAK-LSMNLTVINFISKYCYTKFIYYYLKIDKL*RYSNFWLFQTKLMLFTSTLQF 224
            K Q+ R + L + + ++  ++   + + IYY        RY +FW F+     FT+   +
Sbjct: 3426 KKQIFRQRALQLRMQLLETLNSSVFPESIYYDYFYKTFERYCDFWFFR---RTFTTQYAY 3482

Query: 223  IHIYYFCF 200
            + I  + F
Sbjct: 3483 MIIMTYVF 3490


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,260
Number of Sequences: 5004
Number of extensions: 39366
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)