Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F07
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                31   0.95 
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)             30   2.2  
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)                   28   6.7  
SB_50303| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-25)               28   6.7  
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_21766| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-15)               28   6.7  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   8.8  

>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 679  HDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEAHDAPVGDEIASTAEP 536
            + Q Q ++ TQGP+       G DP A+ T   + A     I+   EP
Sbjct: 1063 YQQKQAQKETQGPFSSRPQGAGHDPRAWGTTTTYSAQAPVHISRQREP 1110


>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
          Length = 241

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 709 FASXDAHSRDHDQDQKEEPTQGPYEDDEGMVGDDPAAYLTNEA 581
           F   D    + D+D +E+   G  EDDE   GD  A    +EA
Sbjct: 102 FDDGDDEEDEDDEDDEEDSDDGDDEDDEKESGDGDAGNAKDEA 144


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 688 SRDHDQDQKEEPTQGPYEDDEGMVGDD----PAAYLTNEAHDAPVGDEIASTAEPDATEH 521
           +RD D   K++  +   EDDEG +GD           N  H   + D++ +    D+TEH
Sbjct: 91  NRDEDLKNKDDKEESEEEDDEGELGDTLHWIDRMGGGNSHHSENLSDDLGTI---DSTEH 147

Query: 520 S 518
           +
Sbjct: 148 A 148


>SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3)
          Length = 451

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 625 GMVGDDPAAYLTN-EAHDAPVGDEIASTAEPD 533
           G+  D P   ++  EA  AP+GD ++   EPD
Sbjct: 416 GLAADAPVRPVSEGEAESAPLGDRVSQAEEPD 447


>SB_50303| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-25)
          Length = 319

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 703 SXDAHSRDHDQDQKEEPTQGPYEDDE 626
           S +AH R H   Q++ P QG  ED+E
Sbjct: 87  SRNAHQRRHSLWQQQPPKQGKEEDEE 112


>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 703 SXDAHSRDHDQDQKEEPTQGPYEDDE 626
           S +AH R H   Q++ P QG  ED+E
Sbjct: 307 SRNAHQRRHSLWQQQPPKQGKEEDEE 332


>SB_21766| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-15)
          Length = 281

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 703 SXDAHSRDHDQDQKEEPTQGPYEDDE 626
           S +AH R H   Q++ P QG  ED+E
Sbjct: 49  SRNAHQRRHSLWQQQPPKQGKEEDEE 74


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 601  RP-DRLPPYPHHLRTDPEWVLPSGPGRDRG 687
            RP DRLP +PHH+ T   ++  + P    G
Sbjct: 1696 RPADRLPKHPHHVPTPSAYIAKTDPSTRPG 1725


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,209,195
Number of Sequences: 59808
Number of extensions: 343562
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)