Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F07
         (723 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   7.2  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   9.6  
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    23   9.6  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 682  DHDQDQKEEPTQGPYEDDEGMVGDDP 605
            ++  + + +P +   E DEG+  DDP
Sbjct: 1350 ENQNEDEVQPMEVEEERDEGVAADDP 1375


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 628 EGMVGDDPAAYLTNEAHDAPVGDEIASTAEPDATEH 521
           + +   D    +  E  D P G+E   + EP  TEH
Sbjct: 716 DNLADADSLTTVEKEEGDNPDGEEEKLSHEPTPTEH 751


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 241 VIWGNICNTVEDAGDS 194
           V+WG +C  V + GD+
Sbjct: 376 VVWGFLCKYVPEPGDA 391


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,361
Number of Sequences: 2352
Number of extensions: 11439
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)