Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F06
         (759 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54UQ4 Cluster: Ribokinase; n=1; Dictyostelium discoide...    34   3.3  
UniRef50_Q4Z1H7 Cluster: Protease, putative; n=4; Plasmodium|Rep...    34   3.3  
UniRef50_O42926 Cluster: Vacuolar protein sorting-associated pro...    34   4.4  

>UniRef50_Q54UQ4 Cluster: Ribokinase; n=1; Dictyostelium discoideum
           AX4|Rep: Ribokinase - Dictyostelium discoideum AX4
          Length = 382

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 22/91 (24%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
 Frame = +1

Query: 331 RSTVQNGAQI--NIGVTFNLQLNHIKLYKATEICRLFF-LNCSSKRYLLLNCYKFTVCMC 501
           +S +QN + +   + V+ N+ L+ +K+ K +  C+    L   +   L+L  +KF   + 
Sbjct: 191 KSQIQNSSLLLCQLEVSLNVTLHALKIAKESNKCKTMLNLTPINNDPLILEMFKFVDILI 250

Query: 502 VSKSRGV*LYLQFHDHHSDEHKIFNIAQHLQ 594
           V++   + LY    +++++  K FNI Q ++
Sbjct: 251 VNEIELIGLYNSTFNNNNNNEKDFNINQLME 281


>UniRef50_Q4Z1H7 Cluster: Protease, putative; n=4; Plasmodium|Rep:
           Protease, putative - Plasmodium berghei
          Length = 441

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 187 TFKSVYKTLKKSDSTINNVKLCK*AIKKNYLSHSRDIEYVF*LILYYLRS 336
           T+K     LK  D ++NN+K  K  IK+N  +  +   Y+F  IL Y+++
Sbjct: 54  TYKKFSVNLKPDDESVNNIKERKNIIKENIFNFYKKNIYLFSKILLYMKN 103


>UniRef50_O42926 Cluster: Vacuolar protein sorting-associated
           protein 13b; n=1; Schizosaccharomyces pombe|Rep:
           Vacuolar protein sorting-associated protein 13b -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 3131

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 5   LMNLXYRNYRVPADST---LSKLNLXCNNSIKITNYYRNRPELNKIIYIFNNKIPTSQ 169
           L +L Y  YRV  +S    L  LN   N S KI   Y    ELN  I+I   ++PT Q
Sbjct: 682 LYHLIYDRYRVSLESARLLLGPLNELKNESNKINEEYYLMNELNTEIFIQAQRVPTPQ 739


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,030,876
Number of Sequences: 1657284
Number of extensions: 11447342
Number of successful extensions: 22136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22128
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)