Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F06
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_59595| Best HMM Match : Gemini_AC4_5 (HMM E-Value=2.5)              30   2.3  
SB_9058| Best HMM Match : Gemini_AC4_5 (HMM E-Value=2.5)               30   2.3  
SB_51080| Best HMM Match : Disintegrin (HMM E-Value=2.4)               29   3.1  
SB_24115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_41317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_48973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)                       29   5.4  
SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)                  28   7.2  
SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_57606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H+ F    H +A + H Y+    TP
Sbjct: 185 YQELHEHYSNVHESFMTGAHERACSHHLYSTFSDTP 220


>SB_59595| Best HMM Match : Gemini_AC4_5 (HMM E-Value=2.5)
          Length = 216

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F    H +A   H+Y+    TP
Sbjct: 161 YQELHEHYSNAHVSFMTEAHERACGHHFYSTFSDTP 196


>SB_9058| Best HMM Match : Gemini_AC4_5 (HMM E-Value=2.5)
          Length = 216

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F    H +A   H+Y+    TP
Sbjct: 161 YQELHEHYSNAHVSFMTEAHERACGHHFYSTFSDTP 196


>SB_51080| Best HMM Match : Disintegrin (HMM E-Value=2.4)
          Length = 297

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F    H +A   H+Y+    TP
Sbjct: 177 YQELHEHYSNAHVDFITEAHERACRHHFYSTFSDTP 212


>SB_24115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F +  H +A   H Y+    TP
Sbjct: 161 YQELHEHYSNMHVSFMMGAHEKACRHHLYSTFSDTP 196


>SB_41317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F    H +A   H Y+    TP
Sbjct: 185 YQELHEHYSNVHVSFMTGAHERACKHHLYSTFSDTP 220


>SB_48973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F    H +A   H Y+    TP
Sbjct: 64  YQELHEHYSNMHVSFMTGAHEKACRHHLYSTFSDTP 99


>SB_34802| Best HMM Match : SBP (HMM E-Value=7.9)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 529 YLQFHDHHSDEHKIFNIAQHLQAST*HYYNVNIKTP 636
           Y + H+H+S+ H  F    H +A   H Y+    TP
Sbjct: 161 YQELHEHYSNMHVSFMTGAHEKACRHHLYSTFSDTP 196


>SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)
          Length = 336

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 47  STLSKLNLXCNNSI-KITNYYRNRPELNKII 136
           + L +L L  N  + K TNY  + P+LNK+I
Sbjct: 191 NNLDELTLSVNPELLKATNYAEDEPDLNKVI 221


>SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +2

Query: 524 SYIYNSMIIIRMNTKFST*HNIYRLRHNIITM*ILKHPVHIYISTSSDH 670
           S+I   +III  NT F    N Y +  NII   I    V I +S SS H
Sbjct: 4   SFIIIIIIIINNNTSFKNNINFYHIVSNIIIAII----VTIVVSPSSSH 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,361,166
Number of Sequences: 59808
Number of extensions: 357476
Number of successful extensions: 552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)