Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F05
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   1.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.4  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    27   4.2  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   9.7  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 732 YEDXEGMVGDDPAA---YLTNEAHDAPXGDEIASTAE 631
           Y D E  +G+D +    YL N + D+P  DE+A  +E
Sbjct: 10  YADWEDDLGEDISGQNEYLDNTSQDSPQNDELAEKSE 46


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 597 RWRGRSARWRPARQSMRSRLQXERREPR*SDTRPDRLPPYP 719
           RWR   ++   +R ++RS    + REP  +   P +LPP P
Sbjct: 341 RWRRSRSQESASRSTIRST---DEREPERTSEDPPQLPPSP 378


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 786 AHSRDHDQDQKEEPTQGPYE-DXEGMVGDDPAAYLTNEAHDAPXGD 652
           + + D+   Q++E   G  E D E  V DD     T EA +AP  D
Sbjct: 19  SENEDNHTSQQDELINGHIENDSETAVSDDGLFSNTEEATEAPEAD 64


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 765 QDQKEEPTQGPYEDXEGMVGD---DPAAYLTNEAHDAPXGDEI 646
           +++ EEP +G  E+ E    +   DP   +T E  DAP   E+
Sbjct: 124 KEEAEEPQEGGEEEEEEEEEEEITDPLEKMTQECMDAPDCKEV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,934
Number of Sequences: 5004
Number of extensions: 46865
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)