Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F05
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    30   2.5  
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    30   2.5  
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321...    29   4.4  
09_02_0334 - 7374974-7375032,7375370-7375586                           28   7.7  

>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -2

Query: 813 DSHYSRAADAHSRDHDQDQKEEPTQGPY-EDXEGMVGDDPAAYLTNEAHDAPXGDEIAST 637
           D   +RAA  H  D   D  ++  +    E  +  +GD    Y TN+  DA  GD + + 
Sbjct: 304 DGRRNRAAPQHFFDSPSDFDDDSHKNICGETIKEYIGDRDLEYNTNDVIDAVVGDAVVAV 363

Query: 636 AEPDATE 616
            E DA +
Sbjct: 364 VE-DAVD 369


>03_01_0371 +
           2883418-2883967,2884097-2884176,2886283-2886339,
           2887152-2887207,2888006-2888079,2889511-2889798,
           2890043-2890120,2890359-2890882,2891315-2891438,
           2891619-2891767,2891983-2892137,2892477-2892682,
           2892768-2892901,2892983-2893284,2893514-2893617,
           2893858-2893928
          Length = 983

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 768 DQDQKEEPTQGPYEDXEGMVGDDPAAYLTNEAHDAPXGD 652
           +QDQ+ +  Q P    EG++ DDP  + + E  D   GD
Sbjct: 296 EQDQQRDSLQKPVTTLEGLIADDP-YHPSPEDEDTDNGD 333


>01_07_0047 +
           40731508-40731714,40731834-40731893,40731992-40732159,
           40732198-40732203,40732898-40732961,40733395-40733690,
           40733799-40733903,40734030-40734066,40734309-40734403,
           40735226-40735282,40735361-40735438,40735527-40735586
          Length = 410

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/71 (21%), Positives = 28/71 (39%)
 Frame = -2

Query: 792 ADAHSRDHDQDQKEEPTQGPYEDXEGMVGDDPAAYLTNEAHDAPXGDEIASTAEPDATEH 613
           ++    D + D+ +E   GP ED +    ++      N+ H+A  G   + +   D +  
Sbjct: 205 SEEDGEDDEDDEDDEEDAGPSEDDKEDEEEENILIDDNDHHNASLGASFSGSGGNDQSHE 264

Query: 612 SVHASGMLAPP 580
           S      L  P
Sbjct: 265 SAQLKSALKKP 275


>09_02_0334 - 7374974-7375032,7375370-7375586
          Length = 91

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +3

Query: 648 SRLQXERREPR*SDTRPDRLPPYPXHLRTDPEWVLPSGPGRDRGN 782
           +R+Q  RR     D  PD  PP     R DP WV   G  +D GN
Sbjct: 29  ARMQLRRRGSSAVDA-PDPAPPSS---RVDPAWVKTMGRRQDGGN 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,861
Number of Sequences: 37544
Number of extensions: 300825
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)