Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F05
         (814 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131078-1|BAC85128.1| 1386|Homo sapiens FLJ00274 protein protein.     31   3.7  
AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear...    31   5.0  
AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear...    31   5.0  
AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetit...    30   8.7  
AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetit...    30   8.7  
AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetit...    30   8.7  
AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetit...    30   8.7  

>AK131078-1|BAC85128.1| 1386|Homo sapiens FLJ00274 protein protein.
          Length = 1386

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -2

Query: 783 HSRDHDQDQKEEPTQGPYEDXEGMVGDDPAAYLTNEAHDAPXGDEIASTAEPDATE 616
           H    DQ+  + P +G  +D EG    DPA        D P  +++   AE  + E
Sbjct: 122 HIHGEDQEPPDTPGEGEEDDEEGCASTDPAGADEGSGPDRPT-EDMGQDAEDTSEE 176


>AF419855-1|AAP97290.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +3

Query: 546 KRTTTKPDFNKRGAPTCRWRGRS-ARWRPARQSMRSRLQXERREP----R*SDTR---PD 701
           ++  T+P    R     R R RS +  RP R+    ++   RR P    R S  R   P 
Sbjct: 270 EKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSDKMYSPRRRPSPRRRPSPRRRTPPR 329

Query: 702 RLPPYPXHLRT 734
           R+PP P H R+
Sbjct: 330 RMPPPPRHRRS 340


>AF048977-1|AAC09321.1|  820|Homo sapiens Ser/Arg-related nuclear
           matrix protein protein.
          Length = 820

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = +3

Query: 546 KRTTTKPDFNKRGAPTCRWRGRS-ARWRPARQSMRSRLQXERREP----R*SDTR---PD 701
           ++  T+P    R     R R RS +  RP R+    ++   RR P    R S  R   P 
Sbjct: 270 EKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSDKMYSPRRRPSPRRRPSPRRRTPPR 329

Query: 702 RLPPYPXHLRT 734
           R+PP P H R+
Sbjct: 330 RMPPPPRHRRS 340


>AL445686-4|CAI14682.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
 Frame = +3

Query: 546 KRTTTKPDFNKRGAPTCRWRGRS-ARWRPARQSM-RSRLQXERREP----R*SDTR---P 698
           ++  T+P    R     R R RS +  RP R+   RSR    RR P    R S  R   P
Sbjct: 270 EKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPP 329

Query: 699 DRLPPYPXHLRT 734
            R+PP P H R+
Sbjct: 330 RRMPPPPRHRRS 341


>AL445686-3|CAI14683.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 546 KRTTTKPDFNKRGAPTCRWRGRS-ARWRPARQ--SMRSRLQXERREPR*SD-TRPDRLPP 713
           ++  T+P    R     R R RS +  RP R+  S   R    RR P     T P R+PP
Sbjct: 270 EKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPP 329

Query: 714 YPXHLRT 734
            P H R+
Sbjct: 330 PPRHRRS 336


>AL445648-3|CAH73090.1|  904|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 904

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
 Frame = +3

Query: 546 KRTTTKPDFNKRGAPTCRWRGRS-ARWRPARQSM-RSRLQXERREP----R*SDTR---P 698
           ++  T+P    R     R R RS +  RP R+   RSR    RR P    R S  R   P
Sbjct: 270 EKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPP 329

Query: 699 DRLPPYPXHLRT 734
            R+PP P H R+
Sbjct: 330 RRMPPPPRHRRS 341


>AL445648-2|CAH73089.1|  913|Homo sapiens serine/arginine repetitive
           matrix 1 protein.
          Length = 913

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +3

Query: 546 KRTTTKPDFNKRGAPTCRWRGRS-ARWRPARQ--SMRSRLQXERREPR*SD-TRPDRLPP 713
           ++  T+P    R     R R RS +  RP R+  S   R    RR P     T P R+PP
Sbjct: 270 EKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPP 329

Query: 714 YPXHLRT 734
            P H R+
Sbjct: 330 PPRHRRS 336


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,500,564
Number of Sequences: 237096
Number of extensions: 1584750
Number of successful extensions: 7146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7146
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)