Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F04
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05934 Cluster: Vacuolar import and degradation protein...    35   2.6  
UniRef50_A1HG51 Cluster: Putative uncharacterized protein; n=2; ...    34   4.6  
UniRef50_Q2H8B1 Cluster: Putative uncharacterized protein; n=2; ...    34   4.6  
UniRef50_A7TJM5 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  
UniRef50_A0D345 Cluster: Chromosome undetermined scaffold_36, wh...    33   8.0  

>UniRef50_Q05934 Cluster: Vacuolar import and degradation protein
           22; n=2; Saccharomyces cerevisiae|Rep: Vacuolar import
           and degradation protein 22 - Saccharomyces cerevisiae
           (Baker's yeast)
          Length = 901

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 271 IFSMSFVKFYNRMNQTW*DNNRADLLSISIELSFYQQ*KYNNILLSHLHKYN 426
           +F M  + F++  +  W  NN   +LSI     F+ Q K   +++ +LH+YN
Sbjct: 274 LFEMQKINFFSLSHSVW--NNTISILSIQYYDDFHSQVKTLPLIIQNLHEYN 323


>UniRef50_A1HG51 Cluster: Putative uncharacterized protein; n=2;
           Ralstonia pickettii|Rep: Putative uncharacterized
           protein - Ralstonia pickettii 12J
          Length = 85

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 511 TRSERARRRLGLATCGHRIHIFLGFSNDFFSHVLYKYI*CMHRKVR 648
           TR E    RL  A CG RIH F  FS     H    Y+ C+  ++R
Sbjct: 32  TRLEFWESRLAFAFCGKRIHSFFPFSKQVSFHGHALYVHCLEFQMR 77


>UniRef50_Q2H8B1 Cluster: Putative uncharacterized protein; n=2;
           Sordariomycetes|Rep: Putative uncharacterized protein -
           Chaetomium globosum (Soil fungus)
          Length = 419

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 496 YINECTRSERARRRLGLATCGHRIHIFLGF 585
           ++  CTR  + R+ +G A C   IH+FL F
Sbjct: 327 FVERCTRDAKLRKHIGRAPCQPDIHLFLAF 356


>UniRef50_A7TJM5 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 671

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 256 NEETFIFSMSFVKFYNRMNQTW*DNNRADLLSISIELSFYQQ*KYNN 396
           NE   +  ++F+KF+N +N+ W DN     +   I+  F ++  YN+
Sbjct: 607 NESALLLMLNFIKFFNAVNEQW-DNKLLIEVQEKIDAKFNEKRNYND 652


>UniRef50_A0D345 Cluster: Chromosome undetermined scaffold_36, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_36,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 148

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -3

Query: 337 LCYYLTTFDSFCYKILQ 287
           LC+ LT+F SFCYKILQ
Sbjct: 7   LCFILTSFYSFCYKILQ 23


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,620,403
Number of Sequences: 1657284
Number of extensions: 14260098
Number of successful extensions: 34461
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34442
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)