Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F04
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.89 
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    24   1.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    24   1.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.8  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   4.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   6.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.3  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 671 VRASVRGARTFRCI 630
           +R  ++GARTFRC+
Sbjct: 35  LREGLKGARTFRCV 48


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 705 TRARHLYHHIATHTGRLPF 761
           TR  HL  H+  HTG  P+
Sbjct: 20  TRDHHLKTHMRLHTGERPY 38


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 708 RARHLYHHIATHTGRLPFV 764
           +  HL  H+  HTG  PFV
Sbjct: 328 KTSHLKAHLRWHTGERPFV 346


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 705 TRARHLYHHIATHTGRLPF 761
           TR  HL  H+  HTG  P+
Sbjct: 173 TRDHHLKTHMRLHTGERPY 191


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 717 HLYHHIATHTGRLPF 761
           HL +H+  H G  PF
Sbjct: 245 HLEYHLRNHAGSKPF 259


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 717 HLYHHIATHTGRLPF 761
           HL +H+  H G  PF
Sbjct: 3   HLEYHLRNHAGSKPF 17


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 237  GVSFHGTSTPPPS 199
            GV   GT+ PPPS
Sbjct: 1103 GVPLKGTAVPPPS 1115


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 418 CVNDLIKYYYIS 383
           C+N LI YY+IS
Sbjct: 391 CLNTLIFYYHIS 402


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 263 SSFLGQ*GSVFHFTEPPPHPLLHFYL 186
           +  +GQ  S+F+ T P  H  L  Y+
Sbjct: 141 TDLMGQ--SIFNITSPDDHDRLRMYI 164


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 335 LLLSYHV*FILL*NFTKDILKINVSSF 255
           LL+++H+   L+ +  K +LK  +S+F
Sbjct: 376 LLITFHIGSQLVLHTVKTVLKTTMSTF 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,116
Number of Sequences: 336
Number of extensions: 4402
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)