Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_F04
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59293| Best HMM Match : 7tm_1 (HMM E-Value=0)                       31   1.4  
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)              29   5.5  
SB_24580| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.5  
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)                29   5.5  
SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)               28   9.7  
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)                 28   9.7  
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.7  

>SB_59293| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 326

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 321 PRLIHSVIKFYKRHTENKCFFIFRSIRIGVSFHGTSTPPPSSLLFNVTYCVCAPLVLI 148
           P   H  +   K      C +IF +I  G+     +TPPP   L     C   PL+++
Sbjct: 94  PLTYHDTVTTEKAKIAISCIWIFAAIMAGLKIVLWNTPPPVYELAVTISCFIIPLIIM 151


>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
          Length = 974

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 777 LTVAVQREDVRCASQCDGISVGL-VSAPNLYXXI-CVRACLCARR 649
           L+V+V    V  +  C  +SV + V+  NLY  + C+RAC+C  R
Sbjct: 133 LSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLSR 177


>SB_24580| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 315 LIHSVIKFYKRHTENKCFFIFRSIRIGVSFH 223
           +IHS  K YK     KCF ++R+++  +S H
Sbjct: 334 MIHSGQKPYKCDECGKCFILYRNLKTHLSIH 364


>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
          Length = 119

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -1

Query: 777 LTVAVQREDVRCASQCDGISVGL-VSAPNLYXXI-CVRACLCARR 649
           L+V+V    V  +  C  +SV + V+  NLY  + C+RAC+C  R
Sbjct: 63  LSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLSR 107


>SB_22002| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 431

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 705 TRARHLYHHIATHTGRLPF 761
           +R+ HL  HI THTG  PF
Sbjct: 343 SRSDHLTTHIRTHTGEKPF 361


>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 669

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 705 TRARHLYHHIATHTGRLPF 761
           +R+ HL  HI THTG  PF
Sbjct: 581 SRSDHLTTHIRTHTGEKPF 599


>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 705  TRARHLYHHIATHTGRLPFV 764
            TR+ HL  H+  HTG  P+V
Sbjct: 1164 TRSSHLKTHVLVHTGEKPYV 1183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,731,062
Number of Sequences: 59808
Number of extensions: 460177
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)