Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E24
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.38 
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   6.2  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   8.2  

>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 21/70 (30%), Positives = 37/70 (52%)
 Frame = -2

Query: 644 VKVYSEYQDXKYDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQGNPCVERIIIILH 465
           V+ Y+ Y+   + + TK   T  VDS+H++   + S+    LL   Q  P +E+I  IL 
Sbjct: 46  VQEYTGYKGVTFIVSTKWNLT--VDSIHKLIPEIKSSPSACLLLVNQPYPVIEKITDILT 103

Query: 464 KDCMAHSSKL 435
           K  + +++ L
Sbjct: 104 KHGITNANLL 113


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
 Frame = -2

Query: 710 INFHIYEHQEELWKEAFKNKSNVKVYSEYQDXKYD-----IYTKI-PCTMIVDSVHQMFY 549
           ++ HIY +    + E  +N SNVKV + YQ+  ++     IY K+    +++  +H  F 
Sbjct: 154 VHTHIYFNGGGSFLET-ENYSNVKVVARYQETDFEKSAAIIYVKVGKGNVVLTGIHPEFS 212

Query: 548 SLGS 537
           + GS
Sbjct: 213 AEGS 216


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 467 VRLLLSFRHKDYPVIVS---TAS*ICLTPENKT 556
           V+LL    +KDYP +VS   T   + L P+NK+
Sbjct: 420 VQLLKGLDYKDYPTVVSRIRTLHHVKLHPDNKS 452


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 713 VINFHIYEHQEELWKEAFKNKSNVK 639
           VINF IYE  E LW + F +   ++
Sbjct: 138 VINF-IYEKNERLWSDPFVSSQRLR 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,920
Number of Sequences: 5004
Number of extensions: 49029
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)