Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E24
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z74036-5|CAA98489.3|  171|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AY190131-1|AAO33925.1|  171|Caenorhabditis elegans CNB-1 protein.      28   7.7  
AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = -2

Query: 683 EELWKEAFKNKSNVKVYSEYQDXKYDIYTKIPCTMIVDSVHQMFYSLGSNKFMKLLKRLQ 504
           E ++ E     S   VYS   + KYD  T  P  + +   +  +Y      F+      Q
Sbjct: 320 EHIYDEPIHRTSTTNVYSSTYERKYDFKTTFPPEIEMPEGYHDYYDPSKFMFLDAKGYYQ 379

Query: 503 GN 498
           GN
Sbjct: 380 GN 381


>Z74038-6|CAA98496.1|  423|Caenorhabditis elegans Hypothetical
           protein F58B4.5 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 548 NKTFDEQNLLS*YMVSLYICHIXHLGI 628
           +K FD++N L  Y++S Y  +I H+G+
Sbjct: 141 SKPFDDENKLKAYLISEYYPNIHHIGM 167


>AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.7 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 385 LLSKLITALAM*FICILSFDECAIQSL 465
           L ++LIT   +  IC+LS D CA QSL
Sbjct: 40  LNAQLITITNLYGICVLSTDRCACQSL 66


>Z74036-5|CAA98489.3|  171|Caenorhabditis elegans Hypothetical
           protein F55C10.1 protein.
          Length = 171

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -2

Query: 548 SLGSNKFMKLLKRLQGNPCVERIIIILHKDCMAHSSKLRIHMNYIANAVISFDSNNVLKA 369
           SL   +FM L   LQ NP V+R+I I  +D        R  +  I+   +  D N  LK 
Sbjct: 37  SLSVEEFMSL-PELQQNPLVQRVIDIFDEDGNGEVD-FREFIQGISQFSVKGDKNTKLKF 94

Query: 368 LINIKKGAK--FIKTEEIFSL 312
              I    +  FI   E+F +
Sbjct: 95  AFRIYDMDRDGFISNGELFQV 115


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -2

Query: 695 YEHQEELWKEAFKNKSNVKVYSE--YQDXKYDIYTKIPCTMIVDSVHQMFYSLGSNKFMK 522
           Y    E W + F+ K+  K YSE  + D  +    K P     + +   F  +G  + MK
Sbjct: 561 YSSPSEFWLDPFEKKNRGKKYSESDFSDELHTFLAKEPHLKFRNDIR--FTMMGKIEAMK 618

Query: 521 LLKRLQ 504
           ++ R++
Sbjct: 619 MMFRVR 624


>AY190131-1|AAO33925.1|  171|Caenorhabditis elegans CNB-1 protein.
          Length = 171

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -2

Query: 548 SLGSNKFMKLLKRLQGNPCVERIIIILHKDCMAHSSKLRIHMNYIANAVISFDSNNVLKA 369
           SL   +FM L   LQ NP V+R+I I  +D        R  +  I+   +  D N  LK 
Sbjct: 37  SLSVEEFMSL-PELQQNPLVQRVIDIFDEDGNGEVD-FREFIQGISQFSVKGDKNTKLKF 94

Query: 368 LINIKKGAK--FIKTEEIFSL 312
              I    +  FI   E+F +
Sbjct: 95  AFRIYDMDRDGFISNGELFQV 115


>AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical
           protein Y51F10.2 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 247 QKNHLQKSFPPLKLKWIRQKNYRSII 170
           +KNH+  S  PL+++  RQ+N R I+
Sbjct: 165 KKNHVSISLQPLRVEMQRQENQRRIV 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,863
Number of Sequences: 27780
Number of extensions: 259312
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)