Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E21
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   5.9  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   7.7  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 29  VQLNYSLNR*LINTISFSLDLAIILYH*FVFFGAFSVSQQVLIFSSSRFLP*VFYFY 199
           +Q +  L+  LI  IS+     ++      F G  +V+Q+VL  ++S+F P   YFY
Sbjct: 332 LQFDVELDEKLIKEISYQARGDLVAMS--AFLGG-AVAQEVLKATTSKFYPLKQYFY 385


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 315 FSVDFLFQYFVVKRNSLALSLG*LVESFEFVFTEFYHFVPYD 440
           +S D L +YF+ K+ S +   G    SF FV +    F+ YD
Sbjct: 115 WSTDEL-RYFLCKKESDSCYFGNASSSFHFVTSPSTFFIRYD 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,942
Number of Sequences: 5004
Number of extensions: 23381
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)