Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E20
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   8.1  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   8.1  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   8.1  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.1  

>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 345 SINGIATFSRYQIIV 389
           SIN I TFS++Q+I+
Sbjct: 93  SINSIRTFSKFQVII 107


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 345 SINGIATFSRYQIIV 389
           SIN I TFS++Q+I+
Sbjct: 93  SINSIRTFSKFQVII 107


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 345 SINGIATFSRYQIIV 389
           SIN I TFS++Q+I+
Sbjct: 93  SINSIRTFSKFQVII 107


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 345 SINGIATFSRYQIIV 389
           SIN I TFS++Q+I+
Sbjct: 93  SINSIRTFSKFQVII 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,870
Number of Sequences: 5004
Number of extensions: 30265
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)