Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E20
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical ... 30 1.4
Z81473-8|CAB03899.2| 418|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL031636-1|CAA21046.2| 418|Caenorhabditis elegans Hypothetical ... 29 3.2
Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z46787-22|CAO78708.1| 666|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-21|CAO78707.1| 714|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 27 9.8
Z35596-8|CAO78718.1| 666|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-7|CAO78717.1| 714|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like pot... 27 9.8
>AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical
protein C16C4.7 protein.
Length = 361
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 306 FQYFTKLILDLIMSINGIATFSRYQIIVNYMKI*INTSI 422
FQ+ K L ++SI I+TFSR +I +Y +I ++ SI
Sbjct: 155 FQFQNKFFLRHLISICRISTFSRSRIRFSYSRIWLHISI 193
>Z81473-8|CAB03899.2| 418|Caenorhabditis elegans Hypothetical
protein Y47H9A.1 protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 348 INGIATFSRYQIIVNYMKI*INTSIMSL*TKCNQIM*INNLSIEMNFVPS 497
ING TF+ Y + ++ I ++ I TK + + N+S+E+ + PS
Sbjct: 369 INGTFTFTNYPLDRLFLDIELDEDIQIFKTKLDDESSVENVSVEVYWKPS 418
>AL031636-1|CAA21046.2| 418|Caenorhabditis elegans Hypothetical
protein Y47H9A.1 protein.
Length = 418
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 348 INGIATFSRYQIIVNYMKI*INTSIMSL*TKCNQIM*INNLSIEMNFVPS 497
ING TF+ Y + ++ I ++ I TK + + N+S+E+ + PS
Sbjct: 369 INGTFTFTNYPLDRLFLDIELDEDIQIFKTKLDDESSVENVSVEVYWKPS 418
>Z77652-2|CAB01113.1| 665|Caenorhabditis elegans Hypothetical
protein C06B3.2 protein.
Length = 665
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +2
Query: 272 RYS*NKYIIDLISIFY*INIG---LNNVHQWNCYVLSI 376
R S + YI+ L+ ++Y +N+G L+ V W YV I
Sbjct: 604 RLSYSAYIVHLMVVYYFLNVGDKPLHFVSTWQVYVYYI 641
>Z46787-22|CAO78708.1| 666|Caenorhabditis elegans Hypothetical
protein C30D11.1h protein.
Length = 666
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
>Z46787-21|CAO78707.1| 714|Caenorhabditis elegans Hypothetical
protein C30D11.1g protein.
Length = 714
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
>Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
>Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 81 CTIVHYSPFKAVWDWIILLLVIYTAVF 107
>Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 85 CTIVHYSPFKAVWDWIILLLVIYTAVF 111
>Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 143 CTIVHYSPFKAVWDWIILLLVIYTAVF 169
>Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 101 CTIVHYSPFKAVWDWIILLLVIYTAVF 127
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 109 CTIVHYSPFKAVWDWIILLLVIYTAVF 135
>Z35596-8|CAO78718.1| 666|Caenorhabditis elegans Hypothetical
protein C30D11.1h protein.
Length = 666
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
>Z35596-7|CAO78717.1| 714|Caenorhabditis elegans Hypothetical
protein C30D11.1g protein.
Length = 714
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
>Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
>Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 81 CTIVHYSPFKAVWDWIILLLVIYTAVF 107
>Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 85 CTIVHYSPFKAVWDWIILLLVIYTAVF 111
>Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 143 CTIVHYSPFKAVWDWIILLLVIYTAVF 169
>Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 101 CTIVHYSPFKAVWDWIILLLVIYTAVF 127
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 109 CTIVHYSPFKAVWDWIILLLVIYTAVF 135
>AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like
potassium channel protein.
Length = 791
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 264 CDIKNYSLIKNVYKWIMLFIISVKLVF 184
C I +YS K V+ WI+L ++ VF
Sbjct: 71 CTIVHYSPFKAVWDWIILLLVIYTAVF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,408,810
Number of Sequences: 27780
Number of extensions: 153171
Number of successful extensions: 347
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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