Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E18
         (586 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q14Q11 Cluster: Hypothetical transmembrane protein; n=1...    41   0.025
UniRef50_Q0SR58 Cluster: Transcription regulator LytR-like prote...    35   1.6  
UniRef50_A5TTQ8 Cluster: Phosphatidate cytidylyltransferase; n=3...    33   5.0  

>UniRef50_Q14Q11 Cluster: Hypothetical transmembrane protein; n=1;
           Spiroplasma citri|Rep: Hypothetical transmembrane
           protein - Spiroplasma citri
          Length = 312

 Score = 40.7 bits (91), Expect = 0.025
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
 Frame = -3

Query: 383 QILNFKWLSRKVVKM--SLKPKTLSLVEYNSNKLTSAQLINM*INIFVIAKAIQYFGCFF 210
           QIL F +L++K+VK   +LK KTL +++  ++K  +A+ + +  N  V  K I+    + 
Sbjct: 236 QILQFNYLNKKIVKQINNLKVKTL-ILQAEADKFYNAKQVVLITNPLVKIKKIETAKHYL 294

Query: 209 FGHGTILSEIFN 174
           F + TI +EIFN
Sbjct: 295 FTNQTISAEIFN 306


>UniRef50_Q0SR58 Cluster: Transcription regulator LytR-like protein
           lin0463; n=3; Clostridium perfringens|Rep: Transcription
           regulator LytR-like protein lin0463 - Clostridium
           perfringens (strain SM101 / Type A)
          Length = 437

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 302 NSNKLTSAQLINM*INIFVIAKAIQYFGCFFFGHGTILSEIFNIV 168
           N NK +  + I +    F++   I  FG F+F +G+ L E+FNIV
Sbjct: 16  NINKKSLIKRIILGALAFILIFFISIFGYFYFKYGSFLGEVFNIV 60


>UniRef50_A5TTQ8 Cluster: Phosphatidate cytidylyltransferase; n=3;
           Fusobacterium nucleatum|Rep: Phosphatidate
           cytidylyltransferase - Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953
          Length = 263

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 232 YSILVVFFLVTVRFYPKSSILFQLHFT*YF*LGIIRYVLCINIV 101
           Y +L++F L+ +R+Y ++ I+F    T Y  +G I Y+  +N +
Sbjct: 99  YVLLILFVLICLRYYKRAFIIFAFFITTYL-IGSISYIDDLNFI 141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,911,454
Number of Sequences: 1657284
Number of extensions: 6476345
Number of successful extensions: 13693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13690
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)