Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E18
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   4.7  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.1  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   8.1  

>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 140 LKILSEM*LKQY*RFRIKSYRDQKKNNQNTVLLLRLQKCLFTY 268
           +K + ++ LKQ  R  + SY+ QK + Q T + + L K +F Y
Sbjct: 161 IKNIDDLGLKQ--RI-LDSYKKQKPSGQLTSMQIELAKAMFNY 200


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 232 YSILVVF-FLVTVRFYPKSSILFQLHFT*YF*LGIIRYVLCINIV 101
           YSIL    F   +   P S     LHF  +F +    Y LC+++V
Sbjct: 36  YSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSLCLSLV 80


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 280 ADVSLLELYSTSERVXGLSDIXTTLRESHLKFKIWKKYHQKKRTFF-SYSNGANSIEV 450
           AD+++  +   + R  G S    +L      +  ++KY Q K+  F  YS    S+EV
Sbjct: 435 ADIAMHSMPRVALRPNGKSIACQSLDNCIYVYSAYEKYRQNKKKVFKGYSCSGYSLEV 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,879
Number of Sequences: 5004
Number of extensions: 31263
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)