Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E18
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical...    28   4.2  
U29244-11|AAC71092.1|  201|Caenorhabditis elegans Hypothetical p...    27   7.4  

>AC024817-58|AAF59562.4|  536|Caenorhabditis elegans Hypothetical
           protein Y54G2A.29 protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 307 STSERVXGLSDIXTTLRESHLKFKIWKKYHQKKR-TFFSYS 426
           S SE    +SD+  +L ES  KFK+      KKR TFF++S
Sbjct: 80  SMSEEFDTISDMSNSLEESE-KFKLIAGEDDKKRMTFFAHS 119


>U29244-11|AAC71092.1|  201|Caenorhabditis elegans Hypothetical
           protein ZK1248.11 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +2

Query: 167 KQY*RFRIKSYRDQKKNNQNTVLLLRLQ 250
           +QY +  IKS RD+ KN++N + ++++Q
Sbjct: 104 RQYFKDIIKSIRDESKNDENEMEVMQVQ 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,710,396
Number of Sequences: 27780
Number of extensions: 168093
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)