Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E13
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 165 2e-41
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 161 7e-40
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.2
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.1
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 2.8
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314... 29 2.8
02_04_0073 - 19471254-19472681 28 6.5
11_01_0205 + 1617044-1617197,1617845-1618233 28 8.6
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 8.6
03_03_0125 - 14630078-14630136,14630197-14631160 28 8.6
03_03_0122 - 14617879-14618871 28 8.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 165 bits (402), Expect = 2e-41
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 2/171 (1%)
Frame = -3
Query: 715 GKGKMRNRRRIQRKGPLIXFNKDQGX-TRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFV 539
GKGKMRNRR I RKGPLI + + +AFRN+PGV+ LAPGGHLGRFV
Sbjct: 196 GKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFV 255
Query: 538 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 359
IWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V
Sbjct: 256 IWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVK 315
Query: 358 RATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 209
R ++ NPL N A+LKLNPY ++ A L E R K K D++++ L
Sbjct: 316 RREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 161 bits (390), Expect = 7e-40
Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 2/184 (1%)
Frame = -3
Query: 715 GKGKMRNRRRIQRKGPLIXFNKDQGXT-RAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFV 539
GKGKMRNRR I RKGPLI + + +AFRN+PGV+ LAPGGHLGRFV
Sbjct: 195 GKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFV 254
Query: 538 IWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVI 359
IWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V
Sbjct: 255 IWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVK 314
Query: 358 RATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAM 182
+ NPL N A+LKLNPY ++ A L E R K D++++ L + +
Sbjct: 315 LREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIK 374
Query: 181 KAEK 170
A K
Sbjct: 375 AAGK 378
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -1
Query: 573 SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHQNKRR----TSTCPNRRWPTLTSHVFSS 406
S+LR + LD+SSS +P S+ H HHQ + S+ P WP S
Sbjct: 379 SFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPEPSP 436
Query: 405 LMRSGRSSVLPTNA 364
++ SG LP +A
Sbjct: 437 MLSSGLGLGLPYDA 450
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 568 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 428
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 2.8
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = -3
Query: 487 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 320
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 319 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 152
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>03_06_0233 +
32530174-32530492,32531081-32531127,32531277-32531413,
32531673-32531841,32532598-32532885,32533021-32533107,
32533454-32534152,32534244-32534735
Length = 745
Score = 29.5 bits (63), Expect = 2.8
Identities = 26/111 (23%), Positives = 41/111 (36%)
Frame = -2
Query: 698 QPSSYPA*GAPHNXQQGSGXDTRLPQHPRCGAPEC*QAEPTEAGSGRSSWTFRHLDSVRI 519
+P+S A P+ + RL A E A P + G G W R +D
Sbjct: 16 RPASRAA-ATPYERPPAAAAARRLAAAAAAAAAEAEDAYPPQGGGGGGGWVSRLVDPASR 74
Query: 518 RQA*PLIRVMEDTIKTKEELQPAPTEDGQH*PHTSSQV**DQEGPPCSQQT 366
A R+ + + + PAP P ++++ +G P S QT
Sbjct: 75 LIAGGAARLFSTVFRKRLDPAPAPAPPKSTPPGSNNE---PNQGLPESTQT 122
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 528 SPHSAGLTPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSLMR 397
+P G +P S HG HH++++ T N + L V ++R
Sbjct: 20 APRPRGASPLSSHGHHHRSRKIHRTFNNVKITVLCGLVTILVLR 63
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 302 IEFQHRLVVSERVQFACSTDHAFVGSTEDL 391
++ HRLV + +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 8.6
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -3
Query: 481 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 302
P + K + QP + T ++ + + +V K ++ + +TN + ++
Sbjct: 278 PYRDSKLTRILQPALGGNANTAIICNITLAQVHADETKSSLQFASRALRVTNCACVNEIL 337
Query: 301 PYAAVLK--RKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 155
AA+LK RK I ELR + L++ + E+ L+L + KA++ R++R
Sbjct: 338 TDAALLKRQRKEIEELRAK--LRSELEKERISLELEEEK---KAKEQRDKR 383
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 550 GRFVIWTQSAFGRL-DPLFGSWK 485
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 550 GRFVIWTQSAFGRL-DPLFGSWK 485
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,125,198
Number of Sequences: 37544
Number of extensions: 329936
Number of successful extensions: 924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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