Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_E09
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.6  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   3.8  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.6  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   8.8  
SPBC1683.10c |pcl1||ferrous iron transporter Pcl1|Schizosaccharo...    25   8.8  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 601 WYPEECIVNSKCQRIFYIFTSICYCNSHRQC 509
           W+P  CI +SK Q  F  F S    + + QC
Sbjct: 49  WFPTSCIDSSKIQNFFSSFHSSNEKDPNAQC 79


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 160 NEIYAFIFNLWFI*QYKLRSIYLQNLL-NCFFKELKLIKL 276
           NE + ++ N+W + +YK  S  L  L+   FF EL +  +
Sbjct: 449 NESFWYLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASI 488


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -1

Query: 615  YTEXVGTLKNALSIRNAKEFFTFLLAFVIAIVTGSVSFVNFIGNFILALMRELSMLIKNS 436
            Y+     L+  +  R    FF  L+AF+  I+   V   + + NF + ++R   ++    
Sbjct: 1820 YSMRQNRLRKKIVQRYGTMFFLLLIAFLALIIIPLVVAKDLLANFEMDILRTYGLMQPRD 1879

Query: 435  T 433
            T
Sbjct: 1880 T 1880


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 225  FTKPFKLLFQRIKINQIDDCNVYFEHSYHNV 317
            +++  KLL++  + N +DDC+  FE   H +
Sbjct: 937  YSRALKLLYRVEQPNLLDDCDGNFERLEHQL 967


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 392 TILLKKSKSPKNIGVEFFINIDNSLIRARMKFPIKFTKETLPVTIAITNASKNVK 556
           T ++++ K+    GV+   + +N   + R     K+TKET P    +  ++K+ K
Sbjct: 101 THIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETRPTVSEVRVSTKDKK 155


>SPBC1683.10c |pcl1||ferrous iron transporter
           Pcl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 480 ILALMRELSMLIKNSTPMFLGLLDFFSKIVGGFYILLAML 361
           ++  +  LS+++  +T  FLG+L F    +GG   + A+L
Sbjct: 172 LITPLEYLSLVLPIATMFFLGMLGFVGAHIGGAKRVRAIL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,070
Number of Sequences: 5004
Number of extensions: 41539
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)