Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E09
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical ... 31 0.66
AF026209-11|AAB71282.1| 353|Caenorhabditis elegans Seven tm rec... 30 1.2
U00040-2|AAA50667.4| 366|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81540-8|CAB04407.2| 326|Caenorhabditis elegans Hypothetical pr... 28 4.6
U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory recep... 28 4.6
U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant respons... 28 4.6
Z81487-2|CAB04000.1| 318|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF026209-7|AAB71276.1| 116|Caenorhabditis elegans Hypothetical ... 27 8.1
>AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical
protein Y38F1A.4 protein.
Length = 342
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -1
Query: 573 RNAKEFFTFLLAFVIAIVTGSVSFVNFIGNFILA-LMRELSMLIKNSTPM 427
RNAK+F FL +I V G +SF+ ++ +I A + +I+ + P+
Sbjct: 164 RNAKQFVCFLADSIIKGVCGVLSFIGYLSIWIWAKKQKNFDTIIRQALPI 213
>AF026209-11|AAB71282.1| 353|Caenorhabditis elegans Seven tm
receptor protein 262 protein.
Length = 353
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 383 NP-PTILLKKSKSPKNIGVEFFINIDNSLIRARMKFPIKFTKETLPVTIAITNAS 544
NP PTI + +S + ++FI+I N+L++ P+ T + +PV+ T S
Sbjct: 301 NPLPTIYIVQSY--RKAVKDYFISIKNTLLKKPTVIPVSHTVQVIPVSSIFTTTS 353
>U00040-2|AAA50667.4| 366|Caenorhabditis elegans Hypothetical
protein C18H2.2 protein.
Length = 366
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 413 KSPKNIGVEFFINIDNSLIRARMKFPIKFTKETLPVTIAITNASKNVKNSLAFRIDN 583
++P N VEF D S I + F I ++ VTI + +++ +S+ F +N
Sbjct: 286 RNPNNCDVEFEAGYDRSYITIKPDFGILKAGSSVKVTITKSFGNESESDSIQFSSNN 342
>Z81540-8|CAB04407.2| 326|Caenorhabditis elegans Hypothetical
protein F46B3.11 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 166 IYAFIFNLWFI*QYKLRSIYLQNLLNCFFKELKLIKLTIVMFILSIVI 309
+Y F ++ I Q + + L + NCF+K +K + +++ FI+ + +
Sbjct: 34 VYQFYSYVFKINQRRDKETLLFPITNCFYKIIKALTRSLICFIVFLTV 81
>U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory receptor
Odr-10 protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 163 EIYAFIFNLWFI*QYKLRSIYLQNLLNCFFKELKLIKLTIVMF 291
E ++I +++ + +R IYL+NLL CF + +VMF
Sbjct: 178 ENVSYIAYVYYQYENGVRHIYLKNLLGCFVHYFVMSMTFVVMF 220
>U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant response
abnormal protein10 protein.
Length = 339
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 163 EIYAFIFNLWFI*QYKLRSIYLQNLLNCFFKELKLIKLTIVMF 291
E ++I +++ + +R IYL+NLL CF + +VMF
Sbjct: 178 ENVSYIAYVYYQYENGVRHIYLKNLLGCFVHYFVMSMTFVVMF 220
>Z81487-2|CAB04000.1| 318|Caenorhabditis elegans Hypothetical
protein C54E10.3 protein.
Length = 318
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 501 VNFIGNFILALMRELSMLIKNSTPMFLGLLDFFSKIVGGFYILLAML 361
V F+G F L ++ + I T + L FFS I+ G ++LL L
Sbjct: 37 VLFVGFFTLLIIFLSFLYIHGKTGKNVHFLPFFSAILAGNFVLLGTL 83
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
protein F21G4.6 protein.
Length = 1885
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 216 LNIFTKPFKLLFQRIKINQIDDCNVYFEHSYHNVLNFSCP*VQEHSV*ITLQA-IYKIHL 392
LN+ K++ + +K+N + D N + H ++N + +++++ I L A Y H+
Sbjct: 23 LNLLKSAHKIIDKNLKVNVLTDRNDTYYRYVHRLMNLTFISLEKNNADIRLAAEAYYEHI 82
Query: 393 L 395
L
Sbjct: 83 L 83
>AF026209-7|AAB71276.1| 116|Caenorhabditis elegans Hypothetical
protein C05E4.7 protein.
Length = 116
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 559 IFYIFTSICYCNSHRQCFFCKFYRKFHSCSDEGVIYVNKKLYTYVFGAF 413
+ +FT I Y S+ CF + +C D V + +LY Y G F
Sbjct: 4 LLQLFTLIIYF-SNISCFIIDSWNIAFTCGDRHVAKADLRLYEYKDGGF 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,677
Number of Sequences: 27780
Number of extensions: 231956
Number of successful extensions: 609
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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