Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_E08
(493 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:... 90 2e-17
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit... 87 2e-16
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep... 47 3e-04
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt... 36 0.65
UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:... 35 0.86
UniRef50_Q9WUG7 Cluster: ARL-6 interacting protein-3; n=1; Mus m... 35 1.1
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit... 35 1.1
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu... 34 1.5
>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 97
Score = 90.2 bits (214), Expect = 2e-17
Identities = 48/92 (52%), Positives = 54/92 (58%)
Frame = -1
Query: 415 SATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDSX 236
SAT+VG+ SRSP+K A PRTA AG+GGMWRFYT+DS
Sbjct: 7 SATNVGASSRSPSKTVA-PRTAGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSP 65
Query: 235 XXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 140
VMSLLFIASVFMLHIWGKYTR+
Sbjct: 66 GLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97
>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
beta; n=31; Eukaryota|Rep: Protein transport protein
Sec61 subunit beta - Homo sapiens (Human)
Length = 96
Score = 87.0 bits (206), Expect = 2e-16
Identities = 47/94 (50%), Positives = 54/94 (57%)
Frame = -1
Query: 421 SPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDD 242
+PS T+VGS RSP+KA A A+G AG+GGMWRFYT+D
Sbjct: 5 TPSGTNVGSSGRSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTED 62
Query: 241 SXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 140
S VMSLLFIASVFMLHIWGKYTR+
Sbjct: 63 SPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96
>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
SJCHGC05179 protein - Schistosoma japonicum (Blood
fluke)
Length = 88
Score = 46.8 bits (106), Expect = 3e-04
Identities = 33/97 (34%), Positives = 42/97 (43%)
Frame = -1
Query: 430 MPQSPSATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFY 251
MP SPSA+S A+A PR + G ++ FY
Sbjct: 1 MPTSPSASS--------KSATASPRGSGGGARQRKAPAASARRPVAPTAQKNP--VFLFY 50
Query: 250 TDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTRA 140
++DS VMSL FI SVF+LH WGKYTR+
Sbjct: 51 SEDSPGIKVGPVPVLVMSLCFIVSVFLLHFWGKYTRS 87
>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
subsp. japonica (Rice)
Length = 80
Score = 35.5 bits (78), Expect = 0.65
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 277 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 143
G+ M +FYTD++ +MS+ FIA V +LH++GK R
Sbjct: 33 GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77
>UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:
Predicted protein - Ajellomyces capsulatus NAm1
Length = 285
Score = 35.1 bits (77), Expect = 0.86
Identities = 36/105 (34%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Frame = -1
Query: 427 PQSPSATSVG-SGSR-----SPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGG 266
P+S S S G SGS SPT GPRTA AG+GG
Sbjct: 179 PKSASGASSGISGSALHRPSSPTPPG-GPRTAMRRRAAADHKESIRNARPASTRSAGAGG 237
Query: 265 ----MWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGKYTR 143
M + YTD+S V+SL FI SV LH+ K +R
Sbjct: 238 SSGTMLKLYTDESPGLKVDPVVVLVLSLGFIFSVVGLHVIAKISR 282
>UniRef50_Q9WUG7 Cluster: ARL-6 interacting protein-3; n=1; Mus
musculus|Rep: ARL-6 interacting protein-3 - Mus musculus
(Mouse)
Length = 88
Score = 34.7 bits (76), Expect = 1.1
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = -1
Query: 415 SATSVGSGSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXAGSGGMWRFYTDDS 239
S +VGS RSP S G + A G AG+GGMWRFY ++S
Sbjct: 6 SGDNVGSSGRSPG-TSVGAQ-AVGSTVRQKRDASCGTESAGRTTSAGTGGMWRFYVENS 62
>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
beta; n=13; Magnoliophyta|Rep: Protein transport protein
Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
cress)
Length = 82
Score = 34.7 bits (76), Expect = 1.1
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -1
Query: 274 SGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGK 152
+G M +FYTDD+ +MS+ FIA V +LH+ GK
Sbjct: 37 AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77
>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 76
Score = 34.3 bits (75), Expect = 1.5
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 277 GSGGMWRFYTDDSXXXXXXXXXXXVMSLLFIASVFMLHIWGK 152
GSG + RFYTD+S MS+ FI V MLH K
Sbjct: 25 GSGSLLRFYTDESPGLKITPVVVLGMSVCFIGFVTMLHAIAK 66
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,104,671
Number of Sequences: 1657284
Number of extensions: 7800088
Number of successful extensions: 15516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15510
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -